1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctttccaaaagtcagacctttttgctgtacttgctatcaaagtttggtacatttccttgatgaaacacttgtgccggtgcctgtagatggccg...
species | Zea mays |
transcript | GRMZM2G144716_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCGAGACTGCGAGCTCTGTGACACGCTTCCTTTAACGCCACAGAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCCGCCA-GTGAAAGATGTATCEST: gi|12046177|gb|BF728316.1|BF728316
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCC-GCCAAGTGAAAGATGTATC
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCTEST: gi|78179752|gb|DV550125.1|DV550125
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCT
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCTEST: gi|6636927|gb|AW261199.1|AW261199
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCT
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCTEST: gi|78081291|gb|DV509703.1|DV509703
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCT
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCTEST: gi|6827615|gb|AW331258.1|AW331258
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCT
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCTEST: gi|211180004|gb|FL285245.1|FL285245
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAATTCCGCCAAGTGAAAGATGTATCT
EST: GTCGAGACTGCGAGCTCTGTGGCAGGCTTTCTTTTACGCCACAAAGAGAG CTCTTGTATGGAGTTCAGATGATCTAAT
genomic: GTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctt ... taattgccagCTCTTGTATGGAGTTCAGATGATCTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGACTACATTACCTCCATGTCGAGACTGCGAGCTCTGTGGCAGGCTTCCTTTAACGCCACAAAGAGAGgtatgttctttccaaaagtcagacctttttgctgtacttgctatcaaagtttggtacatttccttgatgaaacacttgtgccggtgcctgtagatggccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA