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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAAGCTTCTGCTATTCTTTCCAGAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTGgtatgggttgttccatttgccatttctactatatgtagtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcag

Basic information

species Zea mays
transcript GRMZM2G144254_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 6
TATGAAGCTTCTGCTATTCTTTCCAGAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTGgtatgggttgttccatttgccatt---tctactatatgta-gtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcag
                          |||||||||||| ||||||||||| || |||||||| |||||| |||| |||||||| || |||||||| || |||||| |||  |||||    ||||     | || | ||||  || |   |  |||  |   || || |  |        ||| || ||    || |    |  |                               
--------------------------AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcag----ttggttcttccattgttatttaatt-------------------------------