1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGCTGGCTACCCCAACTGCTGTGATGGTTGCGACTGGAGTTGGTGCCTCACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAGgtatgaaataatctcatctattgtgagggcgtgcaagtttttttcctttttaaaaaaggtcattgaattgttcagaaatgctaaactatctcatatgccatggtacttggtacttcgtag
species | Zea mays |
transcript | GRMZM2G144083_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAG GTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCTEST: gi|160481581|gb|EY254413.1|EY254413
genomic: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAGgtatgaaata ... tacttcgtagGTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCT
EST: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAG GTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCTEST: gi|148967967|gb|EE019285.2|EE019285
genomic: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAGgtatgaaata ... tacttcgtagGTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCT
EST: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAG GTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCT
genomic: CACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAGgtatgaaata ... tacttcgtagGTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCTGGCTACCCCAACTGCTGTGATGGTTGCGACTGGAGTTGGTGCCTCACATGGTGTTCTGATCAAGGGTGGGCAAGCTCTGGAGAGTGCACAGAAGgtatgaaataatctcatctattgtgagggcgtgcaagtttttttcctttttaaaaaaggtcattgaattgttcagaaatgctaaactatctcatatgccatggtacttggtacttcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA