1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTTGTGCGCCATATTGCTTCATCATCAAACGAGGAAGCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatcataaacttgcttatactctgttttacggcaccggatgtttactatcgtttaatttgctcag
species | Zea mays |
transcript | GRMZM2G143767_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|60340294|gb|DN207267.1|DN207267
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478458|gb|FL136947.1|FL136947
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCCGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478445|gb|FL136934.1|FL136934
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478452|gb|FL136941.1|FL136941
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCCGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478451|gb|FL136940.1|FL136940
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478456|gb|FL136945.1|FL136945
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCCGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478450|gb|FL136939.1|FL136939
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCCGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478447|gb|FL136936.1|FL136936
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478453|gb|FL136942.1|FL136942
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211376140|gb|FL136932.1|FL136932
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGAEST: gi|211478444|gb|FL136933.1|FL136933
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
EST: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCCGGAGGACCAACCAT TTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
genomic: GCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatca ... atttgctcagTTTCGACAAGATCATTGCGAAGGAAATCCCTTCGAGCATCGTATATGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTGCGCCATATTGCTTCATCATCAAACGAGGAAGCTGCTGCCAGAGCAGCCGCCGCCACTGCTGACGCTGGAGGACCAACCATgtagatatcataaacttgcttatactctgttttacggcaccggatgtttactatcgtttaatttgctcag
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA