1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCATGTGACATATATGAACATATGGGCATGAAGTTCAACGAGTTTATTGTCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttgacacaatacaaaatatctactgttcaaagttcactttgtctatttctttagcgcaggaaattgacataatatgtcaattttataaattttt...
species | Zea mays |
transcript | GRMZM2G142693_T02 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCA AGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTTEST: gi|71438786|gb|DR819836.1|DR819836
genomic: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttga ... tataccttagAGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTT
EST: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCA AGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTTEST: gi|78027345|gb|DV495732.1|DV495732
genomic: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttga ... tataccttagAGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTT
EST: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCA AGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTTEST: gi|67033577|gb|CO462326.1|CO462326
genomic: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttga ... tataccttagAGAAAAAGAATGGGGTTAGGGAACCTTGAACCAACATTTGAAACATTGGTT
EST: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCA AGAAANAGAATGGG-TTAGGGAACNT-GNNACCA-CATT-GAAACATGGGT
genomic: TCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttga ... tataccttagAGAAAAAGAATGGGGTTAGGGAACCTTGA-ACCAACATTTGAAACATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATGTGACATATATGAACATATGGGCATGAAGTTCAACGAGTTTATTGTCTTCCTGTGCCTTGTTTATCTTCTAAATGACCCTGCAGTGTCTGAAGCAgtatccttgacacaatacaaaatatctactgttcaaagttcactttgtctatttctttagcgcaggaaattgacataatatgtcaattttataaattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaata