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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAGATGGACTGGGAGATATGAGGCACATCTTTGGGATAACAGTTGCAGAAGGGAAGGACAAACTCGTAAGGGTCGTCAAGgtatacaaatataatgcaacatactgtcattaaatatgctttttctgtaagttttatatttcaccaatgatgttgttattgttaactgacattgcttcac...

Basic information

species Zea mays
transcript GRMZM2G141638_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141638_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g67410.1 (Oryza sativa), 5'ss of exon 3
GCATAGATGGACTGGGAGATATGAGGCACATCTTTGGGATAACAGTTGCAGAAGGGAAGGACAAACTCGTAAGGGTCGTCAAGgtatacaaatataatgcaacatactgtcattaaatatgctttt-tctgtaagttttatatttcaccaatgatgttgttattgttaactgacattgcttcac-----------------------------------------------
|||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || || |||||||| ||||||||||||||||  | ||  || ||| |  ||     ||||| | |  |||| |     | |      |   ||  ||  ||||  | ||  |||    |||| |   |                                                
GCATAGATGGACAGGGAGGTATGAGGCTCATCTTTGGGACAACAGCTGCAGAAGAGAGGGCCAAACTCGCAAGGGTCGTCAAGgtaggctaac-tagtgccatttaaatcgattaattgtttttttatgctccaatggcgattgatactgatcttgtttctttttctaatgatcatttcgggatcgaatgatcttcctctgtttgatcgaacttggcttttgaatctacag

upper sequence: GRMZM2G141638_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S131_131V6.1 (Physcomitrella patens), 5'ss of exon 3
GCATAGATGGACTGGGAGATATGAGGCACATCTTTGGGATAACAGTTGCAGAAGGGAAGGACAAACTCGTAAGGGTCGTCAAGgtatac---aaatataatgcaacata---ctgtcatta-aatatgctttttctgtaagttttatatttcaccaatgat--gttgttattgttaactga--cattgcttcac----------------------------------------------------------------------------------------
|||| | ||||||||  | || ||||||||||| ||||| || | ||| |||| |||||| |||||||| || ||||| ||||||||      |  ||  || | |  |   || || ||| ||  | | || |  ||     | |  ||  |   |   |  | ||   || | | ||    ||||  ||                                                                                           
GCATCGTTGGACTGGACGGTACGAGGCACATCTGTGGGACAATACTTGTAGAAAGGAAGGTCAAACTCGCAAAGGTCGACAAGgtatgactggaggatcttgtagcccagaactctctttataagtttccttctgagtcgtagtgaagttgaaaggacagtctgctgaacttctgagctagagcattcattggataatcaggcgacaattgcaatgtggtgaaggttgcatacgcagcatctcacgatctaatgtatttgggtactgtcatgtgctgagcag