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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaata...

Basic information

species Zea mays
transcript GRMZM2G140689_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g06410.1 (Oryza sativa), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaa---tt---atctgctgctctcctatttcactgatatatt-ttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaata
||| || |||||| ||||||||||||||||||||||  | |||||||| || ||||| ||||||||||| ||||||||||||||||| || ||||| |||||| ||  ||| |   ||   ||  | |||||| || |||  |   |  ||  |||  || | |  || || |   |     || | | |   | |||         
GGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGgtttgttctttgaggcttcgaattaggtgctcttctgtttatccactgaatgatttcgtgaagcctagcttaatctcaattgtgtcgagtatgtaactgt-------

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G38690.2 (Glycine max), 5'ss of exon 4
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaata-------
   ||| || ||| | |||||    |||||||| ||| |||| || || ||||| ||  | ||||| ||||||||||||||||||||||| || ||||| || ||| | ||  || |    |  | |  ||  |   || |      | | ||     | |||  |||| |||  |  ||   | || | | |   |||        
TCATTCTTCAGCGCTTTTCTTTCAATACAACACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCGATCCAAAATAAAgtgagttgcttctttttgctttaattttatagctttttgtttggaaatgtttg---ttggggt--aatatttg--tttccctcgtttaagtaaacaaatgacagttc

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G41500.1 (Glycine max), 5'ss of exon 2
GGTTTCGTCGGCG-TTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagt-cgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaata----
   ||| |||||  || || ||    ||||| || |||||||| || || || ||  |  | ||||||||||||||||||||||| || || |||||||| || ||| || ||  || |    | || |  | |||   |   | || | || || |   | |||  | ||||||  | ||   |   | | | |   |||     
-CATTCATCGGCACTTTTTTTTTCAATACAATACTGCATTGGGACCCCCTTACCGTATTTTGGTGGATACCAACTTCATCAATTTTTCCATCCAGAATAAAgtgagtgcgctttgttgtgc-tttctattttttttttttataacatatgttgtggacttgtggt--agtacttgtgtccctctta--taaataaacaaatgaact

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G31740.1 (Glycine max), 5'ss of exon 4
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactgatatattttttatg-caacagaggttcaatacttgcatgcccac---tgcttcactcagttaata
   ||| || ||  | |||||    ||||| || ||| |||| || || ||||| ||  | ||||| |||||||||||||||||||| || |||||||| || ||| | || ||| |    |  |  | | ||     || || ||| || ||  || |   |||   | |||  | |   ||   || |       |||    
TCATTCTTCAGCACTTTTCTTTCAATACAATACTGCACTGGGACCCCCTTATCGTGTTTTGGTGGACACCAACTTCATCAATTTCTCAATCCAGAATAAAgtgagttgcttcattttgcttttatagctttttgtttggaaatgtttgttgtggtaatatttgtttccttcttttaagtaaacaaatgatagttctggtt----

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G44090.1 (Glycine max), 5'ss of exon 3
-GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagt-cgtttaattat-ctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactgcttcactcagttaata----
    ||| |||||  | || ||||  ||||| || |||||||| || || || ||  |  | ||||||||||||||||||||||| || || |||||||| || |||  | ||  || | ||   |      ||||  | ||| ||      | ||  | |    ||  | |    ||  |     | ||     || | ||     
GTCATTCCTCGGCCCTTTTTTTCAA-TACAATACTGCATTGGGACCCCCTTACCGTATTTTAGTGGATACCAACTTCATCAATTTTTCCATCCAGAATAAAgtgagtgtgctttgttttgctttagggggtgtattggattgagat------tttgagagaatattttgacaaaaacaatcttgaagattttaaaagattatgtggg

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgt------tagtcgttta-attatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccactg-cttcactcagttaata--------------------------------------------------------------------
 ||| | || | | | |||||     ||||| |    ||||  || || || |||||  | ||||||||||| |||||||| ||||| || |||||||||||       | ||  ||| |||||||         || |  |    || |   |  ||   || | |       |  |||  | |    || ||| | | | || ||                                                                     
TGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGGTTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGgtactacacaatcaattacattatctaaaatagagctgtaaccggaatgtgcatgataaagaaaatatcgattttggttgagttctttttgtcttgaataacttgattgaaatcttcttgtttattgtgcaaatgggtatcgttttttacttagtttcttctgttttatgttatag

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G46230.2 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactga--tatattttttatgca-acagaggttcaatacttgcatgcccactgcttcactcagttaata------------------------------------------------------
 ||| |  | | | | |||||    |||||| |  ||||||  || || || || ||  | |||||||| ||||||||||| ||||| || |||||||||||  ||    | ||  ||   |||  | || | |||| ||  |||| |    |||   |  ||  ||       |  ||   |  || |  ||    ||   |                                                      
TGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGgtcggt----tcatcttcaattgcatttctctatcacagagctataatcagaatgtgtatcgatctttgtagagtttatagtc-ttggtgaacctgattggaatctctcattgtttgaaatcctttttgacttattttgctctggtgtatctaatag

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactgatatattttttatgcaacagaggttcaatacttgcatgcccac-tgcttcactcagttaata------
 ||| |||| ||  | |||||||  |||||||| || ||||||||||| ||||||||  | ||||||||||| ||||||||||| || || |||||||| || ||| |||||     ||| || | |  ||    |  ||      | || |  |       ||||||  |||  | |     ||  | |   | | ||||      
TGTTCCGTCCGCTCTTTTCTTCAAGTACAACACTGCTTTGGGGCCGCCTTATCGGGTTTTGGTGGATACCAATTTCATCAATTTTTCTATTCAGAATAAAgtgagt-gttta-----ctgttgttttgttaacgtagggaacatgatcttgtttaggttctattcaatttttgttttcttgggtgtattaaata-tgaatatatctc

upper sequence: GRMZM2G140689_T01 (Zea mays), 5'ss of exon 3
lower sequence: EDP01317 (Chlamydomonas reinhardtii), 5'ss of exon 3
GGTTTCGTCGGCGTTGTTCTTCAGCTACAACACAGCATTGGGGCCGCCGTATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtttaattatctgctgctctcctatttcactgatatattttt--tatgcaacagaggttcaa-tacttgcatgcccactgcttcactcagttaata
 || ||||||||| |||||||| ||||||||||     ||||||||||||||| |||| | ||||| |||||||| ||||| ||||| ||  |||| |||||  |  |         | |     |     | |  |    |   |  |  | |||      |||| ||    | ||| |  |   ||      | ||     
-GTGTCGTCGGCGCTGTTCTTCCGCTACAACACGCAGCTGGGGCCGCCGTATCAGGTGCTGGTGGACACCAACTTTATCAACTTCTCCATCAAGAACAAGgtgcgctggggctggggcagaacaccaagggtctagcgagcactatgctagtctgcgtgcccggttgaagcgttggcaggggccgggcgagggccggtcg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352269|gb|CD436626.1|CD436626
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|71445647|gb|DR826697.1|DR826697
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|88754303|gb|DY538444.1|DY538444
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|93013575|gb|EB639095.1|EB639095
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|88746998|gb|DY531139.1|DY531139
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|74236372|gb|DT644286.1|DT644286
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|76021687|gb|DT948857.1|DT948857
EST:     GGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: GGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|50326783|gb|CO521909.1|CO521909
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|74245266|gb|DT653180.1|DT653180
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|211295565|gb|FL447041.1|FL447041
EST:     ATCGGGGGATTGTGGATCCCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGA-TTGGAGAAGGGAATGATGGATTGCCTTT-TGCAAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGC-AAAAT
EST: gi|50332974|gb|CO528100.1|CO528100
EST:     ATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|89247134|gb|DY618920.1|DY618920
EST:     ATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|93011681|gb|EB637201.1|EB637201
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|74239821|gb|DT647735.1|DT647735
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|213173441|gb|FM193835.1|FM193835
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|76018425|gb|DT945595.1|DT945595
EST:     GGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: GGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|50326824|gb|CO521950.1|CO521950
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|78025632|gb|DV494019.1|DV494019
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|33468200|gb|CF245249.1|CF245249
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|78077064|gb|DV505498.1|DV505498
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|76292363|gb|DV031931.1|DV031931
EST:     ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: ATCGGGTGATTGTGGATACCAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
EST: gi|5688786|gb|AI941801.1|AI941801
EST:     CAACTTCATCAATTTCTCGATACAGAATAAG                         CTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT
genomic: CAACTTCATCAATTTCTCGATACAGAATAAGgttagtcgtt ... ccccatgcagCTGGATTTGGAGAAGGGAATGATGGATTGCCTTTATGCAAAAT