1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAACACCAAAAGCCCAAAGCTCCAAAGAAGCTACAGTAATAATGATTCGCGGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaactgttttggatccctaacattaatattgttatgaccattgaccagttcaattttgattaaatcgtagtccttcatcgtctttctgcatggtg...
species | Zea mays |
transcript | GRMZM2G138425_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTG GTGGTAAACAACCCAGAGAAGACTCCACTTCCTACTTTCTTCTGEST: gi|211363226|gb|FL385763.1|FL385763
genomic: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaact ... actttgacagGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTG
EST: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTG GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATEST: gi|211068522|gb|FL399012.1|FL399012
genomic: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaact ... actttgacagGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTAT
EST: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTG GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATEST: gi|211107469|gb|FL390858.1|FL390858
genomic: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaact ... actttgacagGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTAT
EST: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTG GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTAT
genomic: GGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaact ... actttgacagGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACACCAAAAGCCCAAAGCTCCAAAGAAGCTACAGTAATAATGATTCGCGGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATACAGCTGgtactaaactgttttggatccctaacattaatattgttatgaccattgaccagttcaattttgattaaatcgtagtccttcatcgtctttctgcatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG