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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGAATATTGAATGTCAAGGTGATTGGAGGCACCAACCTAGCCATCAGGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttggtcgttttgttagaatcacaacaaaataaacatatactttgttatcaaattacagcgccctcttgttgattgcag

Basic information

species Zea mays
transcript GRMZM2G138349_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138349_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g10480.1 (Oryza sativa), 5'ss of exon 7
CATTGGAATATTGAATGTCAAGGTGATTGGAGGCACCAACCTAGCCATCAGGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttg---------gtcgttttgttagaatc---acaacaaaataaacatatactttgttat--caaattacagcgccctcttgttgattgcag----------------------------------------------
||| ||||||||||||||||||||||  ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||| | ||              || || | |  ||    |||| || | || ||  | ||  |  |     |  |||  | | |||  || |   ||                                               
CATCGGAATATTGAATGTCAAGGTGAAAGGAGGCACCAACCTAGCCATCAGAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtc-tctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213172275|gb|FM186438.1|FM186438
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|78179014|gb|DV549387.1|DV549387
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|50334442|gb|CO529568.1|CO529568
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|12046228|gb|BF728367.1|BF728367
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|211245510|gb|FK953342.1|FK953342
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|6918414|gb|AW399944.1|AW399944
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
EST: gi|78087463|gb|DV515856.1|DV515856
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA