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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGATGGCGAAACTGAAGGAGTTGTTGCAAAAGAGTGAAAACCACATTTGTGCTGACTGTGGTGCATCTGATCCCAAATGGGCgtaagtatttgtgtgagcatgaataggtcaccatgtgctcaatttcagtttgcttgaactttctgtcttttctcccatttggatatcagccctggcagct...

Basic information

species Zea mays
transcript GRMZM2G138349_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138349_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g10480.3 (Oryza sativa), 5'ss of exon 4
CTAAGATGGCGAAACTGAAGGAGTTGTTGCAAAAGAGTGAAAACCACATTTGTGCTGACTGTGGTGCATCTGATCCCAAATGGGCgtaagtatttgtgtgagcatgaataggtcaccatgtgctcaatttcagtttgcttgaactttctgtcttttctcccatttggatatcagccctgg--cagct---
|||||||||| |||||||||||| | ||||| |  ||||||||||  || |||||||||||  | ||  |||| |||||||||||||||||||||   | | | ||| |     || || |||  |   || | || |  |    |       ||| |   |  ||  | |      ||   ||| |   
CTAAGATGGCAAAACTGAAGGAGCTATTGCACAGAAGTGAAAACCGTATCTGTGCTGACTGCAGCGCGCCTGACCCCAAATGGGCgtaagtattt---tcaacctgattcaa--actatctgcagagcatctgattcccagtggctgtaagactttgtagaacctgattgttcaatttgaatcagttggt

upper sequence: GRMZM2G138349_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 3
CTAAGATGGCGAAACTGAAGGAGTTGTTGCAAAAGAGTGAAAACCACATTTGTGCTGACTGTGGTGCATCTGATCCCAAATGGGCgtaagtatt--tgtgtgagcatgaataggtcac--catgtgctcaatttcagtttgcttgaactttctgtcttttctcccatttggatatcagccctggcagct
     |     |   | || || || ||||  || ||||| || | || ||||||||| ||||||||  | |||||||||||||||||||| |   ||  |||       ||| | |   | | ||||  |||   | || ||| ||     |  || |       |    |  | |    |       
---GTAAAAGAAGGTTAAAAGATTTATTGCTTAAAAGTGATAATCGCACTTGTGCTGATTGTGGTGCTCCAGATCCCAAATGGGCgtaagtttcactgcttgataccttttagtttatttcctttgctagattaatgatttcttcaaaccggtaactatatcatggtacacaattgaatgatatt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211113745|gb|FL295251.1|FL295251
EST:     AGTGAAAACCACATTTGTGCTGACTGTGGTGCATCTGATCCCAAATGGGC                         GTTCTGTCAGTGACACTGGACAAGTGGTCTGACAGTGAAGTTGACTCCATG
genomic: AGTGAAAACCACATTTGTGCTGACTGTGGTGCATCTGATCCCAAATGGGCgtaagtattt ... tctgacacagGTTCTGTCAGTGACACTGGACAAGTGGTCTGACAGTGAAGTTGACTCCATG