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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGACGTGGCGCTCGTGTTCCTCTCCAGCCAGTGCGGGAACCTGAGATGCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgtttgctgcagccttggtcgcttgagctcgcgttgatccctgctgttttggtggtgtgtcctgtcctgtgtag

Basic information

species Zea mays
transcript GRMZM2G138176_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138176_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g65920.1 (Oryza sativa), 5'ss of exon 3
CAGCGACGTGGCGCTCGTGTTCCTCTCCAGCCAGTGCGGGAACCTGAGATGCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgtttgctgcagccttggtcgc--ttgagctcgcgttgatccctgctgttttggtggtgtgtcctgtcctgtgtag
|||||| |  ||  | |  |  |||   |||||||||  |||||||| ||||||||| |||||||||||||||||||| |  || ||||||||  | |||||||    ||  | |||  | ||| || |  | ||  ||    |||||  |      ||| ||  |                 
CAGCGATGCTGCTTTGGCCTATCTCAGTAGCCAGTGCAAGAACCTGAAATGCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagta-gttgcgccattgctctccatcgaattctttctgatctttataaccttgatgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31360411|gb|CD444768.1|CD444768
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCAGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACT
EST: gi|149021310|gb|EE045776.2|EE045776
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|76915901|gb|DV166158.1|DV166158
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|76012671|gb|DT939841.1|DT939841
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|76918299|gb|DV167237.1|DV167237
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|71433844|gb|DR814894.1|DR814894
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|71445757|gb|DR826807.1|DR826807
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|88757388|gb|DY541529.1|DY541529
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTG
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTG
EST: gi|71450112|gb|DR831162.1|DR831162
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGTCTGGTACTGTGGTCAGCTGCAGTCGTTGAACCTGG
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGG
EST: gi|76019054|gb|DT946224.1|DT946224
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGC
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGC
EST: gi|74244136|gb|DT652050.1|DT652050
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|149072118|gb|EE160356.2|EE160356
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGGCTGTTACTGTGGCC-GCTGCAGTCGTTGAACCTGGG
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGG
EST: gi|78079510|gb|DV507922.1|DV507922
EST:     GCCTGAACCTGTGCGAGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|78108353|gb|DV526771.1|DV526771
EST:     GACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|149000833|gb|EE038060.2|EE038060
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|71322734|gb|DR798048.1|DR798048
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGTCAGCTGCAGTCGATGAATCTGCGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|148952248|gb|EC898054.2|EC898054
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|149072117|gb|EE160355.2|EE160355
EST:     AGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: AGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|148952247|gb|EC898053.2|EC898053
EST:     GGTG-GTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|67019641|gb|CO448390.1|CO448390
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCAGCCTCTGACAGA-CGCTACAG                         -CCATCGNCTGTT-CTGTGGCCAGCTGCAGTCGCTGGACCCTGG-CTGGTG
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACC-TGGGCTGGTG
EST: gi|67019677|gb|CO448426.1|CO448426
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCAGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGC
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|74239737|gb|DT647651.1|DT647651
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAG
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAG
EST: gi|76288557|gb|DV028125.1|DV028125
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAAAGCGCTACAG                         GGCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|76918592|gb|DV167365.1|DV167365
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|74239736|gb|DT647650.1|DT647650
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         CCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|78084632|gb|DV513025.1|DV513025
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGTCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|101397161|gb|EB820504.1|EB820504
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|89761642|gb|DY689571.1|DY689571
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
EST: gi|71766165|gb|DR964102.1|DR964102
EST:     GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAG                         GCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT
genomic: GCCTGAACCTGTGCGGGTGTGTGAGGGCGGCCTCTGACAGAGCGCTACAGgtactttcgt ... tcctgtgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGT