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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccgagctctcatatcattcattgtattcttttttttttgacactgcaaaattataatctcctgttaacag

Basic information

species Zea mays
transcript GRMZM2G136296_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccgagctctcatatcattcattg-tattcttttttttttgacactgcaaaattataatctcctgttaacag-----------------------
||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||| |||| || | |||||||  ||  |  | ||  || ||| | |||   || | |||  | |   ||      |  |  ||||||| ||                        
GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAGgtactccatgtgaattttagatcttctttgaatttacttaa-atgcatagatatcgattgtgtttgtagaaaacatgccagt--ttccctgttaccaatgaaaaattcaaacatgttacag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgct---acatttgaact-----tcatatcttctccgagctctca----tatcattcattg--tattcttttttttttgacactgcaaaattat--aatctcctgttaacag-------------------------------
|| ||| | ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    | | ||||| |     ||||   ||     || |   |    ||  | |  |||  | ||  |||| | |||   |||   ||   |  ||| |     | |                                  
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttggttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccg------agctctcatatcattcattgtattcttttttttttga------cactgcaaaattataatctcctgt-taacag------
|| ||| | ||||| || ||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||     |  |||  ||  | | ||| |        |||||| |      |  |    || | ||||||||        || |  ||   | | | ||  | | | |  |      
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccgagctctcatatcattcatt-gtattcttttttttttgacactgcaaaatt-----ataatctcctgttaacag-------------------------------------
|| ||| | ||||| || |||||||||||||| |||||||| |||||||||||  ||||||| ||||| ||||||||     |  || | ||  | | |  ||    || |  |  |  | | | || |    |  |  || | | |  || |||      || | |  | || |                                        
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAGgtaggcaaactgtattttttttttggtc---actttagttgcgcttactcgtgtgaagtaatcattaaaagtaaaatatttatcagtattttttttttcatttttttcaaagcctctgacctggtatatgattggaacag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgct---acatttgaacttcatatcttctccgagctctcatatcattcattgtattcttttttt--tttgac--actgcaaaattataatctcctgttaacag--------------------------------------------------------------
|| ||| | ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | | ||||| |  |  || |        ||   |   | |  |  ||    |  |||  | |||   | ||      | |  |||  | ||                                                                   
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgattgattcagttgctactactactaccactactttgatctgatcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccgagctctcatatcattcattgt-attcttttttttttgacactgcaaaattataatctcctgttaacag
|||||  | || ||  | |||||||| |||||||||||||||| ||| ||| ||||||| || |||||||| ||||||| | | |  || || ||| |   || |   |   | |  |   ||||| | |   | | ||||  ||   |||  || || |   | |       
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGgtgc-aaagtcaaaattaataac---tcagttattatacactagctattgtgagtgactatattttctcatctcaagtttttatttgacag-------

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccgagctctcatatcattcattgta---ttcttttttttttgacactgcaaaattataatctcctgttaacag
|||||  | || ||  | |||||||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||||||   ||| ||||   ||||   |  | | | | |  |     |||| |   || | ||  | || ||| |  |||  | |  | |    | | |||
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttgtttaaactctttatcacttatgtgttataagttatggaattgaaaagttttcttcatattaacagtttaaaccttttttttttcttgagcag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 3
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgct-acatttga-acttcatatcttctccgagctctcatatcattcattgtattcttttttttttgacactgcaaaattataatctcctgttaacag
|| ||| | ||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||| || |||||||  | | || | |  |      || |    ||| | ||| |||||  | |         | ||  |   | |  ||| |||||   || | || ||
GCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAGgtgcccatagttaacatgtttcggttttttttggctat-ataacattctcttttaagacagatgttgcatcttactcaat-ataat--tctttaaatag

upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctac--atttgaacttcatatcttctccga--gctctcatatcattcattgtattcttttttttttgacactgcaaaattataatctcctgt-taacag
|| ||| | |||||  ||||||| || ||||||||||| || ||||||| | ||||||| ||||||||||| |||||||  |  ||   |  ||  |  ||| |  |      || ||||  |   ||| |   |   |  | |   |||   |  || |  | |    |  || ||
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattgattacaatag