1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAACTGCAGAACAGGTAGTCGACAAGGCAATCCTGATGAAGAAACTAGCACAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtgcaagcataaatacttctgtccaaaaaagaatctaattctcgcttttaatgagtcaatcaatctcatgtttgatcaaatatatacaaaaag...
species | Zea mays |
transcript | GRMZM2G135909_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAG GTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCAEST: gi|148944810|gb|EC889955.2|EC889955
genomic: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtg ... tgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCA
EST: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAG GTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCAEST: gi|148973008|gb|EE024057.2|EE024057
genomic: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtg ... tgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCA
EST: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAG GTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCAEST: gi|60341193|gb|DN208166.1|DN208166
genomic: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtg ... tgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCA
EST: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAG GTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCA
genomic: CAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtg ... tgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTGCAGAACAGGTAGTCGACAAGGCAATCCTGATGAAGAAACTAGCACAAGGGCTAGCATATCGAGAATTGTTATGTTAGCAGAAGCACTTTTTGAGgtatgtcgtgcaagcataaatacttctgtccaaaaaagaatctaattctcgcttttaatgagtcaatcaatctcatgtttgatcaaatatatacaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaaa