1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCAGGGATGACCCCAAGAAGCCTTGCCATCTCACTGCCTTCCTTGGCTACAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccacccccttcttttttattaatcaattaagttgatcacatagtccagttttttgatatctgaaaaatgaattgtaacataagcacgatttgat...
species | Zea mays |
transcript | GRMZM2G135727_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211310954|gb|FL375976.1|FL375976
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211090116|gb|FL396349.1|FL396349
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGANSCTGTTACCATCATTGAAACCCCTCEST: gi|211275659|gb|FL423577.1|FL423577
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAG-CTGGCATGACTCACATTGTCCGTGAG-TTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211449441|gb|FL371193.1|FL371193
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211143441|gb|FL420875.1|FL420875
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAG-CTGGCATGACTCACATTGTCCGTGAGGTTTAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAAACCCTCEST: gi|211390616|gb|FL418025.1|FL418025
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211512093|gb|FL429019.1|FL429019
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211054045|gb|FL387661.1|FL387661
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|78122260|gb|DV540644.1|DV540644
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGGTGGCATGACTCACATTGTCCGTGAGGTTGAAAAGCCAGGATCCA AACTCCATAAAAAGGAAACTTGTGAGGGTGTTACCATCATTGAAACCCCTCEST: gi|211332072|gb|FL381804.1|FL381804
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211522091|gb|FL426849.1|FL426849
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211158132|gb|FL392760.1|FL392760
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211221704|gb|FL402207.1|FL402207
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211080224|gb|FL420002.1|FL420002
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAG-CTGGCATGACTCACATTGTCCGTGAG-TTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTEST: gi|211209612|gb|FL397447.1|FL397447
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCT
EST: CAA-GCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211390088|gb|FL395682.1|FL395682
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211013857|gb|FL374962.1|FL374962
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211045469|gb|FL401139.1|FL401139
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: AAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCGA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTEST: gi|211290580|gb|FL410149.1|FL410149
genomic: AAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCC-Agtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCT
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAG-TTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCT-TTACCATCATTGAAACCCCTCEST: gi|211045111|gb|FL385036.1|FL385036
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211143439|gb|FL420873.1|FL420873
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTCEST: gi|211490707|gb|FL394879.1|FL394879
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAWACCCCTCEST: gi|211209607|gb|FL397442.1|FL397442
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
EST: CAA-GCTGGCATGACTCACATTGTCCGTGA-GTTGAGAAGCCAGGATCCA AACTCCATAAGAWRGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTEST: gi|211118724|gb|FL427527.1|FL427527
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGA-AGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCT
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAG-TTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGEST: gi|211045112|gb|FL385037.1|FL385037
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGG
EST: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCA AACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
genomic: CAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccac ... atttcttcagAACTCCATAAGAAGGAAACTTGTGAGGCTGTTACCATCATTGAAACCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGGGATGACCCCAAGAAGCCTTGCCATCTCACTGCCTTCCTTGGCTACAAGGCTGGCATGACTCACATTGTCCGTGAGGTTGAGAAGCCAGGATCCAgtatgtccacccccttcttttttattaatcaattaagttgatcacatagtccagttttttgatatctgaaaaatgaattgtaacataagcacgatttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC