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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCGGCCATGCTCCGGAACGGCGTGGAGGCATGGCATCTCGGCGTCGTCTGCCTCATCGGAAACTGCTTCCTGATGGGCGCTTACCTCGTCATCCAGgtgacgcagacttggtgacgcagacttggcagcactggggttggatatatatttattgaaatttcctttctgttactgatggattggtggatgcttactactgtaatcgtattttaatatctacgatgttcacgcctgatgcaacaaaatcgccgtccttttcctgacgcgacaacctgcag

Basic information

species Zea mays
transcript GRMZM2G134930_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134930_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g49500.3 (Oryza sativa), 5'ss of exon 3
GGCCGCGGCCATGCTCCGGAACGGCGTGGAGGCATGGCATCTCGGCGTCGTCTGCCTCATCGGAAACTGCTTCCTGATGGGCGCTTACCTCGTCATCCAGgtgacgcagacttggtgacgcagacttggcagcactggggttggatatatatttattgaaatttcctttctgttactgatggattggtggatgcttactactgtaatcgtattttaatatctacgatgttcacgcctgatgcaacaaaatcgccgtccttttcctgacgcgacaacctgcag
| |  ||||||||||||   ||||  | ||  ||||| |||| || ||| |||||||||| || ||||||||||||||||||||||| || ||||| ||||||| ||| |||| |  ||     |||  |     ||  | |  |||| ||| | |||| |     | | | ||  || ||||     | |||  || |       | |  || | || |  |                                                           
GACATCGGCCATGCTCCAATACGGTCTAGAAACATGGAATCTTGGTGTCATCTGCCTCATTGGGAACTGCTTCCTGATGGGCGCTTATCTGGTCATACAGgtgatgcaaactttggaacat---cttatccttggtgaagattaatatctatatgttgataaaatgtctttatttttgttggaaaaa-gaatgtctattgacagggttgctttcttatgtgcag----------------------------------------------------------