1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGTGGTTCATCCTCTAAAGGTTTCTCTGGAGGATTTGTACAATGGCACATCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatctgtatccatagggatgccgtatgttttatagatcagattttcagtatctcatcatggtgtgctgtaatcctgcag
species | Zea mays |
transcript | GRMZM2G134917_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32841430|gb|CD981111.1|CD981111
genomic: TGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149102006|gb|EE287501.2|EE287501
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149075198|gb|EE163697.2|EE163697
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149106297|gb|EE292002.2|EE292002
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|91873346|gb|EB403303.1|EB403303
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|29945152|gb|CB815495.1|CB815495
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|15100410|gb|BI396201.1|BI396201
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32798335|gb|CD950571.1|CD950571
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|211166222|gb|FL048647.1|FL048647
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCGAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGEST: gi|32841638|gb|CD981319.1|CD981319
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGG
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32921796|gb|CF026608.1|CF026608
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCGAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149014598|gb|EE044247.2|EE044247
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32840718|gb|CD980399.1|CD980399
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149090215|gb|EE179517.2|EE179517
genomic: TGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32798802|gb|CD951038.1|CD951038
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|67021035|gb|CO449784.1|CO449784
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|149075441|gb|EE163959.2|EE163959
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32841292|gb|CD980973.1|CD980973
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32848839|gb|CD988520.1|CD988520
genomic: TCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|32921536|gb|CF026348.1|CF026348
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: GCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTCEST: gi|4730438|gb|AI649604.1|AI649604
genomic: GCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
EST: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAEST: gi|32920834|gb|CF025646.1|CF025646
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAA
EST: CGCAGTGTTCTCTGCTCCAAGTGCAATGG TAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
genomic: CGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatc ... aatcctgcagTAAGGGTTCAAAGTCTGGAGCTTCATCGAGGTGTGCTGGTTGCCAAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGTTCATCCTCTAAAGGTTTCTCTGGAGGATTTGTACAATGGCACATCAAAGAAGCTCTCTCTGTCCCGCAGTGTCCTCTGCTCCAAGTGCAATGGgtgggtcatctgtatccatagggatgccgtatgttttatagatcagattttcagtatctcatcatggtgtgctgtaatcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC