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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcagaatgcatttttctttgggtgcagtatgtacttgctgcatgctgacgagccttgcctgtttttttcag

Basic information

species Zea mays
transcript GRMZM2G133959_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133959_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g72870.1 (Oryza sativa), 5'ss of exon 5
GCATCGCTGCGTTTTATAAGGACTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcaga-------atgcatttttc-tttgggtgcagtatgta-cttgctgcatgctgacgagccttgcctgtttttttcag
| |||| ||| || || ||||||| ||| || | ||||||||| ||||||||||| |||||||||||||||||||| ||  |        ||||||||||  | |||      |||||  |||||||| ||||||  |   ||  || |         
GTATCGTTGCATTCTACAAGGACTTTGTTGAAGAGCTCTATGAGAACCTCGGTGGGCAAGCATCTATTACAGgtaagtgtggtgtaatctatgcattttttgtatggactatctatgtggcttgctgcttgctgataaattttcactatgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445213|gb|DR826263.1|DR826263
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAG
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG
EST: gi|148930291|gb|EC872790.2|EC872790
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAG
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG
EST: gi|148931157|gb|EC873861.2|EC873861
EST:     CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAG                         CAATAGGGCACATTTCACACAGCCAGAAA
genomic: CTGTGTCGAGGCGCTCTATGAAAACCTCGGTGGCCAAGCATCTATTACAGgtaactgcag ... tttttttcagCAATAGGGCACATTTCACACAGCCAGAAG