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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatccaactacgtatgatgattattttgtaaacaatacatgaactcaggctgcatgagtgctgacatattgcacaggatagtgatgatacatgg...

Basic information

species Zea mays
transcript GRMZM2G133757_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133757_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 5'ss of exon 3
GTTGCATGTGATGAAACTTCTGAGGCAGCAGACCAGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAA---TAGTGAGgttgtgtatccaactacgtatgatgatt--attttgtaaacaatacatg-aactcaggctgcatgagtgctgacatattgcacaggatagtgatgatacatgg
| ||| ||||||||||| |||||   | |||| |||  |||||||||||||||||||| ||| | ||||||||||||   ||| |||||  | ||||   ||| |  |  |  ||  | | | | |   ||| | | ||    || |  |||| |  || ||| ||  | |  |   | |  || |||||
GCTGCTTGTGATGAAACCTCTGATAAACCAGAACAGTTGTTTCTCCAACTTCTGTTAAATTCAACTAATGGGGACAACGATAGGGAGgtattttatcgctctatgatttcttgtttaactatatgatttatataggcaaaattggttatatgatt-ttgccat-ttatatataaatttcac-atgcatgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240369|gb|DT648283.1|DT648283
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|74237046|gb|DT644960.1|DT644960
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|91051391|gb|EB161809.1|EB161809
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|76289049|gb|DV028617.1|DV028617
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|78110369|gb|DV528781.1|DV528781
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|76285618|gb|DV025186.1|DV025186
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
EST: gi|101395524|gb|EB819690.1|EB819690
EST:     AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAG                         GTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT
genomic: AGGCGTTTCTCCAACTTCTGTTAAGTTCGAGTAATGGGGACAATAGTGAGgttgtgtatc ... ttaatgttagGTTCTGAAGCAGTCTGCTGTTGATTACTTGAATGGATCTGATTATGCATCT