1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTGGATTAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagaccatctcatgttattagcaatattatcatcgcctacattgtaatatatgcagatggtttctacctgtgcag
species | Zea mays |
transcript | GRMZM2G133359_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAG ACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCTEST: gi|211380854|gb|FL107220.1|FL107220
genomic: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagacc ... acctgtgcagACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCT
EST: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAG ACCATTTTGGTAGAACCAACAACTGGAAAATACTGGTGTAGCCATTGCTTCEST: gi|148934194|gb|EC878215.2|EC878215
genomic: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagacc ... acctgtgcagACCATTTTGGTAGAACCAACAACTGGAAA-TACTGGTGTAGCCATTGCTTC
EST: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAG ACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCTEST: gi|211380852|gb|FL107218.1|FL107218
genomic: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagacc ... acctgtgcagACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCT
EST: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAG ACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCT
genomic: TAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagacc ... acctgtgcagACCATTTTGGTAGAACCAACAACTGGAAATACTGGTGTAGCCATTGCTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGATTAAGCATGATTAATGATGCTGAAGAGAAGGGATTAATTTCTCCAGACAAGgttaaagaccatctcatgttattagcaatattatcatcgcctacattgtaatatatgcagatggtttctacctgtgcag
- - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAGA