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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgatccccttacatacagtattagtgtgtttaataattaggctcatgcatttctgttcatgttgaattctgattggtgtttactgttcttttttggtaaaaag

Basic information

species Zea mays
transcript GRMZM2G133226_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 3
---------------------------------------------------GTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgatccccttacatacagtattagtgtgtttaataattaggctcatgcatttctgttcatgttgaattctgattggtgtttactgttcttttttggtaaaaag
                                                     || |  | || || ||||||||||| ||||||||||||||||| ||||||||||  |  | | || || | ||    | |     | | |||| | |||| ||| || ||    |||||| |||| |  |||||     ||  |  ||||||||  
AAATAGCGAGCCATCCGTGCCTTCTGATGCGTTATTCTTCGTTCCGTTCAGAATACTGTTGCGTACTACACCTCTTTCTTTGGCTTATTTACTCTATATGgtatgcttctttcttcacttataatacatttattaaatacacttagtcgcatgtatt-ctatttgaattgaatcctgagtaatgttt-----tccatcatggtaaaag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148947034|gb|EC892331.2|EC892331
EST:     GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CT---T-CAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
genomic: G-TTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... tggtaaaaagCTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
EST: gi|91054599|gb|EB165017.1|EB165017
EST:     GTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
genomic: GTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... tggtaaaaagCTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT