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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAGTGATCCATCAGTGCCTTCTGATTCACTATTCTTTGTGCCGTTTAGGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgatccccttacatacagtattagtgtgtttaataattaggctcatgcatttctgttcatgttgaattctgattggtgtttactgttcttttttggtaaaaagctag

Basic information

species Zea mays
transcript GRMZM2G133226_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 3
TAATAGTGATCCATCAGTGCCTTCTGATTCACTATTCTTTGTGCCGTTTAGGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgatccccttacatacagtattagtgtgtttaataattaggctcatgcatttctgttcatgttgaattctgattggtgtttactgttcttttttggtaaaaagctag
 ||||| || ||||| |||||||||||| |  ||||||| || ||||| ||  || |  | || || ||||||||||| ||||||||||||||||| ||||||||||  |  | | || || | ||    | |     | | |||| | |||| ||| || ||    |||||| |||| |  |||||     ||  |  ||||||||      
AAATAGCGAGCCATCCGTGCCTTCTGATGCGTTATTCTTCGTTCCGTTCAGAATACTGTTGCGTACTACACCTCTTTCTTTGGCTTATTTACTCTATATGgtatgcttctttcttcacttataatacatttattaaatacacttagtcgcatgtatt-ctatttgaattgaatcctgagtaatgttt-----tccatcatggtaaaag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933236|gb|EC876886.2|EC876886
EST:     GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACTCTAC
genomic: GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... aaaaagctagCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACTCTAC
EST: gi|71440136|gb|DR821186.1|DR821186
EST:     GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
genomic: GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... aaaaagctagCT---T-CAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
EST: gi|149014040|gb|EE043561.2|EE043561
EST:     GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
genomic: GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... aaaaagctagCT---T-CAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
EST: gi|148968927|gb|EE019612.2|EE019612
EST:     GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATG                         CTAGCTTCAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT
genomic: GGTTATTACTACGCACCACACCTCTTTCCTTGGCTTATTTACTCTACATGgtatgctgat ... aaaaagctagCT---T-CAATGGAATCGGTCCGTGGAGTTAATGTTCCTATGTATACAACT