Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttagatcgattttccttgttcggatactttttatgctttgcactcatatgttgacacaccagttctttaatccttttgatcacacag

Basic information

species Zea mays
transcript GRMZM2G133213_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 3
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaat---atttagatcgattttccttgttcggatacttttt----atgctttgcac---tcatatgttgacacacca---------gttctttaatccttttgatcacacag
||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||||||| || |||||||||   ||| || ||  |||    |||  | || ||| ||    |  | | | ||   || |    || ||||| |         |   |||||   || | || |  |||
AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgtattcagttc--tttatactgtatgaatgcttgtttgtcaatcctggaacatatcgttatgtgccacacaagcaggatttgccatttaacttttctcataatgcag

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 3
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttagatcgattttccttgttcggatactttttatgctt---tgcact--catatgttgacacaccagttctttaatccttttgatcacacag------------
 ||  |||| |||  ||||||||| || ||||| || ||||||||||||||||||||||| ||| ||||| ||||||| || || || |||||| || |    | | |||  | |  | |  |   ||||    |||   |||| |    | |||   | | |  | |  ||     || ||   | |               
GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatat-tcagaacccattgacttcatccttacttttttctaacttatgtgcattattttttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattag

upper sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttag----------atcgattttccttgttcggatactttttatgctttgcactcatatgttgacacaccagttctttaatccttttgatcacacag
 ||  | || | |   ||| ||||| | ||||| || |||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||   ||| |            || |   ||| |  || |  |  ||| | |  ||     ||  || |  |        | || |     |||     | | ||
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448609|gb|DR829659.1|DR829659
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|148941936|gb|EC886923.2|EC886923
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211036824|gb|FL377561.1|FL377561
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149102560|gb|EE287919.2|EE287919
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211092311|gb|FL381169.1|FL381169
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGT-GGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211130984|gb|FL371913.1|FL371913
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211034363|gb|FL377535.1|FL377535
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211022151|gb|FL381481.1|FL381481
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211135585|gb|FL028679.1|FL028679
EST:     CTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211397544|gb|FL373942.1|FL373942
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149037731|gb|EE155393.2|EE155393
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|78109074|gb|DV527491.1|DV527491
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211135583|gb|FL028677.1|FL028677
EST:     ATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: ATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211156328|gb|FL378563.1|FL378563
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAA
EST: gi|148961502|gb|EE012253.2|EE012253
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211490405|gb|FL381898.1|FL381898
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211223490|gb|FL386109.1|FL386109
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAAGGAGAA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAA
EST: gi|76012143|gb|DT939313.1|DT939313
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149082026|gb|EE171198.2|EE171198
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211156688|gb|FL406074.1|FL406074
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211408063|gb|FL382720.1|FL382720
EST:     CCCCTACTACATTGGATTCTGATCTTGGAYATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
EST: gi|211428817|gb|FL393474.1|FL393474
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|76291173|gb|DV030741.1|DV030741
EST:     TGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: TGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211156867|gb|FL415211.1|FL415211
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCC-ATCATTTCCGCGAGATGAAAGTTGG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGG
EST: gi|211063699|gb|FL417020.1|FL417020
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|78080766|gb|DV509178.1|DV509178
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211031806|gb|FL374010.1|FL374010
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|67014854|gb|CO443603.1|CO443603
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211323819|gb|FL407925.1|FL407925
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|60395988|gb|DN228858.1|DN228858
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149081654|gb|EE170805.2|EE170805
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149080052|gb|EE169070.2|EE169070
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211451633|gb|FL374385.1|FL374385
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|76291174|gb|DV030742.1|DV030742
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211294859|gb|FL410177.1|FL410177
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCC
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCC
EST: gi|211518829|gb|FL412112.1|FL412112
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAG
EST: gi|211164628|gb|FL401349.1|FL401349
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|32856318|gb|CD995999.1|CD995999
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211506310|gb|FL378320.1|FL378320
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211231553|gb|FL371571.1|FL371571
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211471318|gb|FL386742.1|FL386742
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211056836|gb|FL382513.1|FL382513
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211536313|gb|FL400262.1|FL400262
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|7162318|gb|AW519925.1|AW519925
EST:     CCCCTACTACATTGCATTCTGATCTTGCATATTCTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|18965165|gb|BM661428.1|BM661428
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149073961|gb|EE162290.2|EE162290
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211339234|gb|FL411894.1|FL411894
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTC
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTC
EST: gi|211376856|gb|FL402406.1|FL402406
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTNGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211303371|gb|FL404506.1|FL404506
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTWGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|93017180|gb|EB642700.1|EB642700
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|50324318|gb|CO519444.1|CO519444
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211223692|gb|FL399499.1|FL399499
EST:     CCCCTACTACATTGGATTCTGATCTTGGATAYTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCC-ATCATTTCCGCGAGATG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATG
EST: gi|211129521|gb|FL429574.1|FL429574
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211271215|gb|FL391999.1|FL391999
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|50328082|gb|CO523208.1|CO523208
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211116190|gb|FL414276.1|FL414276
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCC-ATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|148958580|gb|EC904827.2|EC904827
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|93014585|gb|EB640105.1|EB640105
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211215179|gb|FL411862.1|FL411862
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211494326|gb|FL423871.1|FL423871
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCA
EST: gi|211373993|gb|FL393860.1|FL393860
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGT
EST: gi|211532834|gb|FL377049.1|FL377049
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211294909|gb|FL412762.1|FL412762
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCA
EST: gi|211205090|gb|FL419141.1|FL419141
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|149073131|gb|EE161405.2|EE161405
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|93014408|gb|EB639928.1|EB639928
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|50332760|gb|CO527886.1|CO527886
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211060115|gb|FL393163.1|FL393163
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
EST: gi|211209584|gb|FL394649.1|FL394649
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTC
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTC
EST: gi|211382028|gb|FL388795.1|FL388795
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAA
EST: gi|91051331|gb|EB161749.1|EB161749
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211423431|gb|FL384447.1|FL384447
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211271214|gb|FL391998.1|FL391998
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211439136|gb|FL388407.1|FL388407
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211527632|gb|FL412982.1|FL412982
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCA
EST: gi|211067941|gb|FL369839.1|FL369839
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCA
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCA
EST: gi|211109351|gb|FL402581.1|FL402581
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211290231|gb|FL387862.1|FL387862
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211251784|gb|FL389217.1|FL389217
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211144799|gb|FL417397.1|FL417397
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|211245226|gb|FL396982.1|FL396982
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGT
EST: gi|211423822|gb|FL403259.1|FL403259
EST:     CCCCTTCTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATCGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagAT-GTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAG
EST: gi|211159857|gb|FL403886.1|FL403886
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATTGAAAGTTGG
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGAT-GAAAGTTGG
EST: gi|211269194|gb|FL409750.1|FL409750
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|78117350|gb|DV535737.1|DV535737
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|18965111|gb|BM661399.1|BM661399
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
EST: gi|6056550|gb|AW090940.1|AW090940
EST:     CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAG                         ATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT
genomic: CCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 172

AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGTGATTATTTGTCTGTGAAGGGACCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 386

AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGTGATTATTTGTCTGTGAAGGGACCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 319

AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGTGATTATTTGTCTGTGAAGGGACCTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 286

AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatattt ... gatcacacagATGTATCCCCAAGGGAGAATGTCCCATCATTTCCGCGAGATGAAAGTTGGTGATTATTTGTCTGTGAAGGGACCTAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttagatcgattttccttgttcggatactttttatgctttgcactcatatgttgacacaccagttctttaatccttttgatcacacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT