Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttcccaatcccccggc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 3
----------------------GGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttcccaatcccccggc
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GGCCGCGGGTGGCGGAGTGCCTGGAGGACATCGACGGCGAGGACCCCGTCCGCAAGGCCTTCAGCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGgtgggtgctggg-------taggt-gatgcagtgc-----gtaatcgtgtacagtttcgagtgttttttgccccc--ttggttctcgtggagtcagtcgacgactcgatttggta-------
upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 3
----------------------GGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttccca-atcccccggc-----------------------------------------------------------------------
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AAGGAAGGGGTTCAGGATGTCTGGAAGATATTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGgtgggtactggg---taggtgttttgttatgttgt-ggttttgttctctctttctt-tctcagtcactttctttctctctc-tctctgtgaatcttgttcaatatccaattacatgtggagggactagggagttaagttacttatgcacatctgaactgtgctctgattgggtggaattggattttgggaacag
upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 2
----------------------GGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTA-CGACTGGgtaggt-gcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttcccaatcccccggc
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GAGGAAGAGGTTCAGGATGTCTGGAAGATATTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGgtgggtactgggtaggtgttttgttatgttgtggttttgttctctctctctctctttctttct---ctatcactttcttttctctctctctctctt-tgtg-aat-------------------
upper sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 4
GGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttcccaatcccccggc
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----------------GAGGACCCTGTAAGGAAAGCGTTCAGAAAGATGTCAATCCAGCTCTACAACTATGGAGAAGGgtgcgtacttgaaaa-gactccgcct-tccagctgtgaggactcat-cttgttg-cacag--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149098917|gb|EE184930.2|EE184930EST: CCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGG GCTGATGGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGA
genomic: CCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcag ... ctgcatgcagGCTGATGGGAAAGGTGGCCTCTGATAAATGTCACAAATGGGTCTTCAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGACATGGACGGCGAGGACCCGGTGCGCAAGGCCTTCATCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGTGGGTACTGGACTACGACTGGgtaggtgcagtgcaggcggcgcacgcacgcaggcatggcaggcagtcgcgttcgatcgagtcgagttgagtcgtgtgcaatctcttcccaatcccccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgg