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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTACAAGTATCAAGCTCAGGCGTTGATGAGGGACTACTTGCTAGCTGATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggttgatttactgtttcgctgcccaagtgattgacttatggttcacgattgcgttgggtaattaaacttgatgcgaatgccgatccatgcttgt...

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 2
TGCTTACAAGTATCAAGCTCAGGCGTTGATGAGGGACTACTTGCTAGCTGATCTACTCGTTCCGTACACCTCTGTGCTCTTTGGCATTGTCCTCTGCAAGgtggtaggttgatttactgtttcgctgcccaagtgattgacttatggttcacgatt-gcgttgggtaattaaacttgatgcgaat-gccgatc-catgcttgt---------
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---GTACAAGTACCAAGCTCAGGAGTTGATGAGAGACTACTTGCTGGCTGATCCACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgcctgttcttgt--------agtttctaccttgtgcttgatgatttgcattgcggaatcag-cgcaatgcttgtcaccgattgcatgtttgtgctgtgttg