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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGATTTCACTCGAATACTGAGCTCCTTTTATTTCAAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatattgtgtcagagctagtatacctatacacatgttccatctttcatttcagaaacttcatgctgatgacgaattatacttgttttag

Basic information

species Zea mays
transcript GRMZM2G132084_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387192|gb|EB815613.1|EB815613
EST:     AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG                         GGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT
genomic: AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatat ... cttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT
EST: gi|211442016|gb|FL419342.1|FL419342
EST:     AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG                         GGGTATGTCCAGCGCACATGCAATTTTTAT
genomic: AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatat ... cttgttttagGGGTATGTCCAGCGCACATGCAATTTTTAT
EST: gi|211506260|gb|FL375259.1|FL375259
EST:     AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG                         GGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATA
genomic: AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatat ... cttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATA
EST: gi|38687922|gb|CK144953.1|CK144953
EST:     AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG                         GGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT
genomic: AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatat ... cttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT
EST: gi|78076717|gb|DV505151.1|DV505151
EST:     AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAG                         GGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT
genomic: AAGGGGTATACTTTATTGACAAAAATACAGCGCATCGAATGGAACAATAGgtaagtatat ... cttgttttagGGGTATGTCCAGCGCACATGCAATTTTTATCACGGCTGTATCATTATATAT