1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAAGAAGGACGGAGGCCTATCCAATAAGAAGAAGAAGCTGGAACGCAGGATGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcacttttcattccaatgaagtgaccccgctgctagcaattttattttttgttgataaaaaccaactatgtatagaccatctatcttcatctcattttctttccaattccag
species | Zea mays |
transcript | GRMZM2G132060_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|20811117|gb|BQ295595.1|BQ295595
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|211160900|gb|FL243906.1|FL243906
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGA-ATGCAACAAACCTGACGTCGTGGAG GTCTGGGATGCNACTGCTGCAAATCCAAAAATGCT-GTATTTCTCAAGGEST: gi|211159301|gb|FL243887.1|FL243887
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGEST: gi|148936928|gb|EC881083.2|EC881083
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148974670|gb|EE025472.2|EE025472
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|31359279|gb|CD443636.1|CD443636
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|89761601|gb|DY689546.1|DY689546
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148944299|gb|EC889396.2|EC889396
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|32929819|gb|CF034631.1|CF034631
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148931686|gb|EC874876.2|EC874876
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|5555529|gb|AI881480.1|AI881480
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|211159306|gb|FL243892.1|FL243892
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAGGGCGEST: gi|22521467|gb|BU080278.1|BU080278
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|91050200|gb|EB160618.1|EB160618
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|211159299|gb|FL243885.1|FL243885
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAGGGCGEST: gi|211162494|gb|FL243913.1|FL243913
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|21843267|gb|BQ703848.1|BQ703848
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCG-GGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148930320|gb|EE284721.2|EE284721
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|211162502|gb|FL243921.1|FL243921
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148931684|gb|EC874873.2|EC874873
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|211159303|gb|FL243889.1|FL243889
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGNATGCA-CTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCEST: gi|26557871|gb|CA830106.1|CA830106
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGG-ATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGC
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|148966452|gb|EE017460.2|EE017460
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCGEST: gi|21843287|gb|BQ703868.1|BQ703868
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
EST: TGAAGATTGCAGACCTC-AACAGATATGCAACAGACCTGACGTCG-GGAG GTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
genomic: TGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcactttt ... ccaattccagGTCTGGGATGCAACTGCTGCAGATCCAAAATTGCTTGTATATCTCAAGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGGACGGAGGCCTATCCAATAAGAAGAAGAAGCTGGAACGCAGGATGAAGATTGCAGACCTCAAACAGATATGCAACAGACCTGACGTCGTGGAGgtgcacttttcattccaatgaagtgaccccgctgctagcaattttattttttgttgataaaaaccaactatgtatagaccatctatcttcatctcattttctttccaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG