Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCTGTCTGGTGGAAAGTTGGTTATGCAAAACTTCAGgtacaatgttggtgttcatgtttttcaattttagatttgcgtagaacaaatgggtaattcctatagttgaattgttcacagctttttaagattagatctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131489_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g12540.1 (Oryza sativa), 5'ss of exon 3
TGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCTGTCTGGTGGAAAGTTGGTTATGCAAAACTTCAGgtacaatgttggtgttcatgtttttcaat-tttagatttgcgtagaacaaatgggtaattcctatagttgaattgttcacagctttttaagattagatctg----
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TGCTGCTCTTGGTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGgta-agtttcagtgttgtactactcaaatatccatgcctcagttcatttagcacacaattg--accgtcagatcaaaacaaaccatc--agatcagtgctaattg
upper sequence: GRMZM2G131489_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S215_109V6.3 (Physcomitrella patens), 5'ss of exon 5
TGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCTGTCTGGTGGAAAGTTGGTTATGCAAAACTTCAGgta-caatgt----tggtg----ttcatgtttttcaattttagattt---------gcgta-gaacaaatgggtaattcctatagttgaattgt-tcacagctttt--taagattagatctg--------------------------------------------------------------------
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TGCTGCTTTGGGTGTAGTAATCCCGGAGCTTCTGGACCGCTTTGGTGGAGTCCAATTTTCGGAGCCTGTTTGGTGGAAAGTGGGATATGCTAAACTTCAGgtaataatttcaactggcgctctttcttactctgcagttcttgctttcttcttgttgcacatgaactgaaagatgacaggtctt-ttgctttgcattgaatcttctaataagttgagagctagtaatcaagtctgtacaaatctcagtgatagctagcgcatactaaaacacccggacgctgagttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4609481|gb|AI600320.1|AI600320EST: GTGGAAAGTTGGTTATGCAAAACTTCAG GGTGATAACCTTGATTACCTTGGGATTCCTGGATTCCGAATTGCTGGTGGT
genomic: GTGGAAAGTTGGTTATGCAAAACTTCAGgtacaatgtt ... aattctacagGGTGATAACCTTGATTACCTTGGGATTCCTGGATTCCGAATTGCTGGTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGCCCTCGGTGTTGTTGTTCCTGAGCTATTAGATCTATTTGGGTTAGTGCATTTTGTGGAGCCTGTCTGGTGGAAAGTTGGTTATGCAAAACTTCAGgtacaatgttggtgttcatgtttttcaattttagatttgcgtagaacaaatgggtaattcctatagttgaattgttcacagctttttaagattagatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA