1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAATTCATATTGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttctgcttaattgttacaatgtaaagctcttgtccacagtaaagtattgctctgacttcttattgccttgcattttggtag
species | Zea mays |
transcript | GRMZM2G131324_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGG ATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGGEST: gi|32931459|gb|CF036271.1|CF036271
genomic: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttc ... attttggtagATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGG
EST: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGG ATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGGEST: gi|26456742|gb|CA828325.1|CA828325
genomic: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttc ... attttggtagATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGG
EST: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGG ATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGGEST: gi|32934477|gb|CF039289.1|CF039289
genomic: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttc ... attttggtagATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGG
EST: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGG ATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGG
genomic: TGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttc ... attttggtagATATCAGAGAGCTGATTTCATTGGATGATGTTATGGAGGAGATTGGGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAATTCATATTGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTGTAGATATGGgtaatttttctgcttaattgttacaatgtaaagctcttgtccacagtaaagtattgctctgacttcttattgccttgcattttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT