1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCTGAGGTTTTTGCTGCAATAATGGACTTCTACTCATCTGGGCAACCACTTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaactatcttctgtacactatctgtcctgcattttttcccttgtcttgcttttctgaacttacctgtctgctctggaattttattatcacaaga...
species | Zea mays |
transcript | GRMZM2G131249_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAEST: gi|211501968|gb|FL391661.1|FL391661
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATA
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGGAGACTCGTANEST: gi|67024319|gb|CO453068.1|CO453068
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGG-AGACTCGTA-
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|211423867|gb|FL405822.1|FL405822
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCA-TTCACGAA GATGATTCTGAAATAGTTGC-ATGATAAAAGAATTATTGEST: gi|89755071|gb|DY685633.1|DY685633
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTG
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|38502507|gb|CF972367.1|CF972367
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTACCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|211150249|gb|FL395020.1|FL395020
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|50338103|gb|CO533229.1|CO533229
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|71436813|gb|DR817863.1|DR817863
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|76012527|gb|DT939697.1|DT939697
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|22472228|gb|BU036708.1|BU036708
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAEST: gi|108953674|gb|EC364835.1|EC364835
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATA
EST: TTTCTGGACTCAAATGCTGCAGCTTCTATGGGACACAGCAAATTCACGAG GATGAATTCTTGAAATAGTTGCCATGGATAAAAAGAATTATTGGAEST: gi|17921487|gb|BM259138.1|BM259138
genomic: TTTCTGGACTCAAATGCTGCAGCTTCTATGG-ACACAGCAA-TTCACGAGgtatctcaac ... tcccccctagGATGA-TTCT-GAAATAGTTGCCATG-ATAAAA-GAATTATTGGA
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTEST: gi|94475082|gb|EB704040.1|EB704040
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|211452112|gb|FL393956.1|FL393956
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|22473172|gb|BU037652.1|BU037652
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|22546273|gb|BU098584.1|BU098584
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATTEST: gi|17921814|gb|BM259465.1|BM259465
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATAGTTEST: gi|84980471|gb|DW530820.1|DW530820
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTT
EST: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAG GATGATTCTGAAATATTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
genomic: TTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaac ... tcccccctagGATGATTCTGAAATAGTTGCCATGATAAAAGAATTATTGGAGACTCGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGAGGTTTTTGCTGCAATAATGGACTTCTACTCATCTGGGCAACCACTTTTTCTGGACTCAAATGCTGCAGCTTCTATGGACACAGCAATTCACGAGgtatctcaactatcttctgtacactatctgtcctgcattttttcccttgtcttgcttttctgaacttacctgtctgctctggaattttattatcacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT