Sequence
atgc intronic sequence ATGC exonic sequenceTGATCCTGTCAATAATGAAAGACGGGAAAAAGTTAAAGAGGCAATGCTCCATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130889_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 3
TGATCCTGTCAATAATGAAAGACGGGAAAAAGTTAAAGAGGCAATGCTCCATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccag
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TGATCCTATTAATAATGAAAGGAGAGAAAAGGTTAAGGAGGCTATGGCCCATGCTTGGAATTCCTATGTGAAGTATGCCTGGGGAATGGATGAACTTCAGgtttgtttagtcaacattctgt--tatttctattgcccttctaactta------tctgagtga-----gctctgaagtgtcttctgtatttttctttgttcaaattattttccag
upper sequence: GRMZM2G130889_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATCCTGTCAATAATGAAAGACGGGAAAAAGTTAAAGAGGCAATGCTCCATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttagtcggtactctgtattaattctgatct---gcatctggttttacatttcctaactgattcta-gatctaaactgccttctgtcatttgctttgctcgcgttgattcccag
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AGATCCAGTTGATAAACAGCGAAGGCAGAAAGTAAAAGAGGCAATGATCCATGCTTGGAGCTCTTATGAAAAGTATGCATGGGGGAAAGATGAGCTTCAGg--tatacaattattttccaaaatacatttcacccttgtgaatacgaaatc-tagtttacgacggactctatgaatcaaattttattttgacgtttagtgcct----------------
upper sequence: GRMZM2G130889_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATCCTGTCAATAATGAAAGACGGGAAAAAGTTAAAGAGGCAATGCTCCATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgttt-gtttagtcggtactctgtattaattctgat-ctg-catctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccag----------------------------------------------------------
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AGATCCAGTTGATGCTCAGCGAATGCAGAGAGTTAAAGAGGCAATGGTTCATGCTTGGAGTTCATATGAAAAGTATGCCTGGGGACAAGATGAGCTTCAGgtacagttttatctttgtatgg--ttagctacaatgctgacagcttatgttaacgttcaccattg--ttcagagaataattgggttgtttaactagttaaaatgagaacactttctacttgcgataaatatatttctgtgaagctatttgtgtaacttttttttttgcattatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19057740|gb|BM736407.1|BM736407EST: ATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAG CCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTT
genomic: ATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttag ... tgattcccagCCACAATCGAAGAATGGTATCAACAGCTTTGGTGGTCTTGGAGCAACCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATCCTGTCAATAATGAAAGACGGGAAAAAGTTAAAGAGGCAATGCTCCATGCTTGGAATTCTTATGTTAAGTATGCCTGGGGAATGGACGAGCTTCAGgtttgtttagtcggtactctgtattaattctgatctgcatctggttttacatttcctaactgattctagatctaaactgccttctgtcatttgctttgctcgcgttgattcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT