1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACAAAATCTGCTGTGGATGATCAGCAATGGCTCACGTACTGGGTGCTGTACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaacaaactttcagcacaagtgggcatttcaccagctttagttccatgtgcagtttggaacttaccataatggtcatatgtggtatatttttta...
species | Zea mays |
transcript | GRMZM2G130548_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAATCTGTTCTTCAATEST: gi|211067676|gb|FL012976.1|FL012976
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAAT
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTGEST: gi|211070406|gb|FL012981.1|FL012981
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTG
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAA-CTGTTCTTCAATTGCTEST: gi|211067666|gb|FL012966.1|FL012966
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCT
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAAT-GCTGEST: gi|211383033|gb|FK976891.1|FK976891
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTG
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAAATTGCTGCTGCACAGEST: gi|211070407|gb|FL012982.1|FL012982
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAA-TTGCTGCTGCACAG
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTGEST: gi|211067664|gb|FL012964.1|FL012964
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTG
EST: TACTCATTTATCACTCTAWTCGAACTCAACTTTGCTCCGGTACTCGAATG GCNTCCTTTCTGGTCTTATGCAAAGCTGTTCTEST: gi|211070409|gb|FL012984.1|FL012984
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCT
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTGEST: gi|211067670|gb|FL012970.1|FL012970
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTG
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTGEST: gi|211070403|gb|FL012978.1|FL012978
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCAATTGCTG
EST: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATG GCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCA
genomic: TACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaac ... cactttgcagGCTTCCTTTCTGGTCTTATGCAAAGCTGTTCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAAATCTGCTGTGGATGATCAGCAATGGCTCACGTACTGGGTGCTGTACTCATTTATCACTCTATTCGAGCTCACCTTTGCTCCGGTACTCGAATGgtaaaacaacaaactttcagcacaagtgggcatttcaccagctttagttccatgtgcagtttggaacttaccataatggtcatatgtggtatatttttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaacaaa