1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGAAGGATGAATCAAGTAGACCTGATGATGTAATTTCAGCTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgtttcctgttaaattttaccattctcttttgtgaaaatagtggacacttgcaccagttaggtttttttttgtgctgtgagaagcacagaaa...
species | Zea mays |
transcript | GRMZM2G130548_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|30052458|gb|AI065747.2|AI065747
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: ATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|29945353|gb|CB815596.1|CB815596
genomic: ATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|78027480|gb|DV495867.1|DV495867
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|111145857|gb|EE258097.1|EE258097
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCACAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|32831864|gb|CD971542.1|CD971542
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTATGGAGGAGGTAGAGGTTGAAEST: gi|22489673|gb|BU049596.1|BU049596
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|211320303|gb|FL454022.1|FL454022
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGWTCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|18649960|gb|BM498779.1|BM498779
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|32865321|gb|CF005003.1|CF005003
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAAEST: gi|211023896|gb|FL457615.1|FL457615
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAAGGATGAATCAAGTAGACCTGATGATGTAATTTCAGCTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgtttcctgttaaattttaccattctcttttgtgaaaatagtggacacttgcaccagttaggtttttttttgtgctgtgagaagcacagaaa
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