1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTCTGGTGACGATGGCCTGGAGGAAGACCCCAATCAGCGGCCGAACAAGAAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacgatagcttgagctccccttcctctaagcatgcaccatttgaaaggattcattttcgagatagatagataatttcatttcattcattaaaaatcgtgtctgattgtttaattggggacgactgtgaattgtgattggtcag
species | Zea mays |
transcript | GRMZM2G130442_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGC GTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAGEST: gi|149074354|gb|EE162738.2|EE162738
genomic: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacga ... gattggtcagGTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAG
EST: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGC GTTCTTCAAGGAGTGCCCGCACCCGGACGATCA-GCAGCGGAAGGAGCTGAEST: gi|148958328|gb|EC904551.2|EC904551
genomic: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacga ... gattggtcagGTTCTTCAAGGAGTGCCCGCACCCGGACGA-CAAGCAGCGGAAGGAGCTGA
EST: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGC GTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAGEST: gi|71421131|gb|DR805311.1|DR805311
genomic: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacga ... gattggtcagGTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAG
EST: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGC GTTCTTCAGGGAGTGCCCGCACCCGGACGACAAGCAGCGAAAGGAGCTGAGEST: gi|148945742|gb|EC891022.2|EC891022
genomic: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacga ... gattggtcagGTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAG
EST: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGC GTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAG
genomic: AAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacga ... gattggtcagGTTCTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGAAGGAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCTGGTGACGATGGCCTGGAGGAAGACCCCAATCAGCGGCCGAACAAGAAGAAGCGATACCACCGCCACACCCAGCACCAGATCCAAGAGATGGAGGCgtaagaacgatagcttgagctccccttcctctaagcatgcaccatttgaaaggattcattttcgagatagatagataatttcatttcattcattaaaaatcgtgtctgattgtttaattggggacgactgtgaattgtgattggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG