1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCCTTGCGCATGACCTGCACACCTCTGACTGCCTGCATGAGCTCCGGCCCGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttcccgagccacccagcaacgcttgcttttaatgcattgatgctaatcctatccgatagtggctgaggagtattttttttttaatcagtggatagtgtgttctcattcatgcacttccatgcatgtttggcag
species | Zea mays |
transcript | GRMZM2G130348_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|149009737|gb|EE154079.2|EE154079
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: GCGACCACATCGAGATTCAGTGGAGAAAGGAACAAAGAATTCCCCATACC GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCAAAEST: gi|6012313|gb|AW061669.1|AW061669
genomic: GCGACCACATCGAGATTCAGTGGAGAA-GGAACAAAGAATTCCC-ATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAA
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|21331057|gb|BQ486438.1|BQ486438
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|76013482|gb|DT940652.1|DT940652
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|26455381|gb|CA826964.1|CA826964
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|14203843|gb|BG837520.1|BG837520
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACEST: gi|71771777|gb|DR969714.1|DR969714
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
EST: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACG GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
genomic: CGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttccc ... tgtttggcagGCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTTGCGCATGACCTGCACACCTCTGACTGCCTGCATGAGCTCCGGCCCGGCGACCACATCGAGATTCAGTGGAGAAGGAACAAAGAATTCCCATACGgtatgttcccgagccacccagcaacgcttgcttttaatgcattgatgctaatcctatccgatagtggctgaggagtattttttttttaatcagtggatagtgtgttctcattcatgcacttccatgcatgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA