Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATTgtgagaattctattctgttccattgttattttctccacttgttacccatgttttgttattattattattattatgtctattgtctcaagtaactaacttacttttgcctgttttttgcag

Basic information

species Zea mays
transcript GRMZM2G129554_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129554_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g51900.1 (Oryza sativa), 5'ss of exon 3
GTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATTgtgagaattctattctgttccattgttattttctccacttgttacccatgttttgttattattattattattatgtctattgtctcaagtaactaacttacttttgcctgttttttgcag
||  |||||||||||| ||||||||||||  ||||||||| |||||||| |||||||||||| |  ||||||||||| || || ||||||||||||| |||||  | |||  ||||||||||||  |  |  ||  ||||||||  |  ||| | |  |   |                 |||||||||  || |  ||||| |||||||
GTTCATAATGAGGCATCATCTCTCCTTGAATTCTGTACATCCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTgtgagaagtctatcttattctgttgttattttctgtaaataatattcatgtttt--tcgtatgaatgctggca-----------------aactaacttgtttcttactgttgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349879|gb|CD434236.1|CD434236
EST:     TGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATT                         -CTTGTTGCATTGTCTGGCCCCCCTAACATTCTCGTATCAACTCCAGCTTG
genomic: TGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATTgtgagaattc ... ttttttgcagAC-TGTTGCATTGTCTGGCCCCCCTAACATTCTCGTATCAACTCCAGCTTG
EST: gi|28909563|gb|CB330990.1|CB330990
EST:     GCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATT                         ACTGTTGCATTGTCTGGCCCCCCTAACATTCTCGTATCAACTCCAGCTTGT
genomic: GCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATTgtgagaattc ... ttttttgcagACTGTTGCATTGTCTGGCCCCCCTAACATTCTCGTATCAACTCCAGCTTGT