Sequence
atgc intronic sequence ATGC exonic sequenceGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGATCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgcacgactccactcctctttgcacatttacgccaatttgttgctgggaccaaggctcatcgctctgtagatatatagcaaaaccggaaacat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 4
GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGATCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgcacgactccactcctctttgcacatttacgccaatttgttgctgggaccaaggct---catcgctctgtagatatatagcaaaaccggaaacat---------
||| ||||||||||||||||| ||||| || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||| || |||||||||||||| | ||| ||| | | || || || | | |||| | || || | |||| |||| | | | | |
GTTTGTGTGGGATGAGGGCAAATACCCAACGATGTCACCGCTCAAGGAGATTGTCGGCAGCATCCAATCACAGGTCTCCAAGATTGAAGATGACATGAAGgtg-------atgacctttttcccttgcgaccacata-----atcactagtcaagacccaacctacatatagtgctgttaatatgtttcgaccctaatgctgtctctagtca
upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 5'ss of exon 4
GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGATCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgcacgactccactcctctttgcacatttacgccaatttgttgctgggaccaaggct-catcgctctgtagatatatagcaaaaccggaaacat--
||||||||||||||||| |||||||| |||||||| ||||||| |||||| || | |||| || ||| || || ||||| |||||||| | ||||| | | | | | | | | || | || | ||| | | || ||| ||| || | || | | || ||
GTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAGgtaaggattcttatttgttcctttaatgtggctttcattataaatcgtttcatttctccgtactatatcttgttgtggacactgag---actagaaagcacaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149102700|gb|EE288050.2|EE288050EST: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAG GTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
genomic: TCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgc ... tcttccccagGTTCGAGCATCGGAATATAATAATGTAAGGAGCCAGCTTAGTGCGATCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGATCGTCGGCAGCATACAGTCACAGGTTGCCAAGATCGAGGATGACATGAAGgtttgtttgcacgactccactcctctttgcacatttacgccaatttgttgctgggaccaaggctcatcgctctgtagatatatagcaaaaccggaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG