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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcggatgggtgccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G128995_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaacccca-------tcggatgggtg--ccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag------------------
||||||||||||||||||||||||| || ||||||||||| || |||||||  ||| | |||||||| ||||||||||||||||||||||||||||| |||||    ||   || |   |||         || | |  | |   ||   ||   |   ||   ||| |     |  |   |   |                  
ACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACGGCGTCCCCGTCGACACCTACCTCACCAGgtcgctcgctcgctcctgcccctgctgcctctcagcttagcgattccaactcttttgctaaagctctctacctcttccttcctttgcttcttcttcttttctag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 3
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcg--gatgggtgccctgttcagc-ttaaaagcttctgtgttgatcgcgcgcgcag-----------------------------------------------------------------------------------------------------------
|||||||| || | ||||| ||||| |||||| | |     ||  |||| |||||  ||||||||||||||||||||||||||||  ||||| | || |||   ||       | |  |  | |||   |||  | |   | ||     ||  |   | |  ||||  | |   |                                                                                                                
ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttccgtttcataatcaatctctgatctgcgttttcttttatattttatattaccatgttattggtatggagtatcattgtctttgtcgatcactaatcttcgtcggagaaactggttggccacctctggtggggtctcccttcccagccattttttatctgtctttttttattggttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211217327|gb|FL397497.1|FL397497
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACA
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACA
EST: gi|211240466|gb|FL378083.1|FL378083
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211131976|gb|FL391859.1|FL391859
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211526764|gb|FL372694.1|FL372694
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211031812|gb|FL374016.1|FL374016
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGAMACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211034476|gb|FL382040.1|FL382040
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCC-ACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211478907|gb|FL382317.1|FL382317
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGAGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211331894|gb|FL371096.1|FL371096
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211045930|gb|FL419466.1|FL419466
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211196623|gb|FL384762.1|FL384762
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGA-ACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211350528|gb|FL378240.1|FL378240
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|87153287|gb|DY398076.1|DY398076
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211520923|gb|FL381010.1|FL381010
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|31363830|gb|CD448185.1|CD448185
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211023088|gb|FL427788.1|FL427788
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCC-ACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|71427970|gb|DR809020.1|DR809020
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211042213|gb|FL387605.1|FL387605
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|148954149|gb|EC899548.2|EC899548
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211327966|gb|FL399630.1|FL399630
EST:     ACCGGGACCCTCACCGTCGACGGNGTCCCCGTCGA-ACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|31348626|gb|CD432983.1|CD432983
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211532950|gb|FL381081.1|FL381081
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211065673|gb|FL393994.1|FL393994
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|19351525|gb|BM896057.1|BM896057
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211363177|gb|FL385284.1|FL385284
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCC
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCC
EST: gi|211493010|gb|FL369795.1|FL369795
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|60358961|gb|DN225934.1|DN225934
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|67032136|gb|CO460885.1|CO460885
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211317751|gb|FL419307.1|FL419307
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCC-ACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211363428|gb|FL397063.1|FL397063
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|148968978|gb|EE019672.2|EE019672
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|22491457|gb|BU051380.1|BU051380
EST:     CACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCTTCTCAAGGAGAT
genomic: CACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211452191|gb|FL398498.1|FL398498
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211452273|gb|FL403779.1|FL403779
EST:     ACCCGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCCACA-TGTCCCCTCTCAAGGAGA
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCC-ACAATGTCCCCTCTCAAGGAGA
EST: gi|67018576|gb|CO447325.1|CO447325
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|149010225|gb|EE042044.2|EE042044
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211413494|gb|FL407160.1|FL407160
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211288089|gb|FL387847.1|FL387847
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|149000734|gb|EE037952.2|EE037952
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211352988|gb|FL379679.1|FL379679
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACSTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|149098811|gb|EE184822.2|EE184822
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211206907|gb|FL385660.1|FL385660
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211057980|gb|FL426570.1|FL426570
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211169417|gb|FL381630.1|FL381630
EST:     CCGGGACCCTCCACCGTCGACGGCGTCCCCGTCGAC-CCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: CCGGGACCCTC-ACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211212618|gb|FL412314.1|FL412314
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGA-ACCTACCTCACTAG                         GTTCGTGTGGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGA
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGG-ATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGA
EST: gi|148963815|gb|EE014912.2|EE014912
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|6095541|gb|AW120208.1|AW120208
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211301307|gb|FL411052.1|FL411052
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211319940|gb|FL427662.1|FL427662
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211461106|gb|FL380550.1|FL380550
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGARAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|78076482|gb|DV504916.1|DV504916
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCANGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211141724|gb|FL403003.1|FL403003
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211017234|gb|FL404253.1|FL404253
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211003766|gb|FL418085.1|FL418085
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGA-ACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAGGAGAT
EST: gi|211229673|gb|FL386151.1|FL386151
EST:     ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAAAGGAGA
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGCAAGTACCCCACAATGTCCCCTCTCAA-GGAGA
EST: gi|211202638|gb|FL424402.1|FL424402
EST:     ACCGGGACCCTCACCGTMGACGGCGTCCCCGTCGA-ACCTACCTCACTAG                         GTTCGTGTGGGATGAGGGC
genomic: ACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgca ... gcgcgcgcagGTTCGTGTGGGATGAGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcggatgggtgccctgttcagcttaaaagcttctgtgttgatcgcgcgcgcag

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