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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAATCCAGCAACTGGTGAGGTCCTTGCAAACGTGTCCTTTATGGGCAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaatgtttcagtgcattcgatttttatgccttagtaccaggattatattatgttccagagcagaactcttgctgtagtgttataaaattctaa...

Basic information

species Zea mays
transcript GRMZM2G128114_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g07760.2 (Oryza sativa), 5'ss of exon 2
GTGCAAAATCCAGCAACTGGTGAGGTCCTTGCAAACGTGTCCTTTATGGGCAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaatgtttcag-tgcattcgatttttatgccttagtaccaggattatattatgttccagagcagaactcttgctgtagtgttataaaattctaa--------
|| ||||||||||||||||| |||   ||||| || ||||||| ||||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||| |||| | || | |  | ||||| |||||||||| | ||         | || || |  || || |     | ||  |||  | | || |||||            
GTTCAAAATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTGATGCAATAGCTTCAGCTCACAGTACATTCTATTgtacgtcagaagtataaactacattcaatttttatgcttcagagttg---ctttagtagg--cctgatc----tttttaatgttatttgattaaatttcttcgagaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000518|gb|EE037700.2|EE037700
EST:     CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT                         CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: gi|211509962|gb|FL438235.1|FL438235
EST:     CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT                         CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: gi|78107121|gb|DV525539.1|DV525539
EST:     CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT                         CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: gi|149087724|gb|EE177069.2|EE177069
EST:     CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT                         CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
EST: gi|67040351|gb|CO466606.1|CO466606
EST:     CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATT                         CTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG
genomic: CAGCAGAGAAACATCTGATGCTATTGCTTCTGCTCACAGTACATTCTATTgtaagtcaaa ... cttctcgtagCTTGGAGTAAACTCACTGCAAGTGAGAGAGGCAAGGCACTAAGAAAATG