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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtgtagggctttgtacctctgcttgatttcacatttagcaattctgctgctgcattactttatattttgcaaaaaggacgagaaagggacata...

Basic information

species Zea mays
transcript GRMZM2G128080_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128080_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 5'ss of exon 3
AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaa---gcagtgtagggctttgtacctctg-cttgatttcacatttagcaattctgctgctgcattactt-tatattttgcaaaaaggacgagaaagggacata
||||| || || ||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||||||   |    | |     |||| |   || | | |  |  | |     |||   |     | ||||    | ||| || |    |    || || | ||    
AATGATAAAAGGGAAAGGCTTGTGAAAGCAAGTCGGGATTTGACAATGAACAGCAAAAAGGCCATCTTTCAGGTTCACAGgtaatttgacaagcaaacaattgtgctagtggcattacattgcttcattaaataaaggaagagaattatccatgtatgtttccttgaca--gataatgtgat---

upper sequence: GRMZM2G128080_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT2G03780.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtgtagggctttgtacctctgcttgatttcac----atttagcaa--ttctgctg----ctgcattactttatattttgcaaa----aaggacgagaaagggacata----
||||| ||| |||||||  | ||||| |  ||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||       |   || | |   | || |||  ||||     |||| |     || || ||    || ||| |   ||   ||||            || |    |  | ||     
AATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGgtaatttcaacacctctgt-tgtttttgtttgtgttcatcaagattttgtgtgtttttgttgtgttcttcatcaagatactgtttgtttgttttgtttactatgttgttatatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191937|gb|FL162063.1|FL162063
EST:     AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG                         GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: gi|211191936|gb|FL162062.1|FL162062
EST:     AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG                         GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: gi|211191938|gb|FL162064.1|FL162064
EST:     AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAC                         GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
EST: gi|211191935|gb|FL162061.1|FL162061
EST:     AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG                         GGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... aagttaacagGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCA