1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccgctttcccgggccgatctctcggcggcgacctagctgctggacagatcgagatctgaaaaaatggcgtgcag
species | Zea mays |
transcript | GRMZM2G127948_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211221107|gb|FL365189.1|FL365189
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211388332|gb|FL320898.1|FL320898
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGGTCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211460076|gb|FL334958.1|FL334958
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCANG GAACCTGAGTGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAEST: gi|211015370|gb|FL327151.1|FL327151
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGA-TGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCA
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211359692|gb|FL340690.1|FL340690
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCRAGATCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211200543|gb|FL334723.1|FL334723
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCRAGGTCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|149076214|gb|EE164811.2|EE164811
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|148967413|gb|EE018639.2|EE018639
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: AGCCGGAGAGCATGAAGGATCTCCGCGAGATCACCGCCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCCTEST: gi|74233832|gb|DT641746.1|DT641746
genomic: AGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCC-AAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GCCGGAGAGCATGAAGGAGCTCCGCNGAGATCATCCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATEST: gi|211147965|gb|FL321980.1|FL321980
genomic: GCCGGAGAGCATGAAGGAGCTCCGC-GAGATCA-CCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
EST: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGGTCACCGCCAAGCACCCATG GAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccg ... tggcgtgcagGAACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATGgtatgttccgctttcccgggccgatctctcggcggcgacctagctgctggacagatcgagatctgaaaaaatggcgtgcag
- - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA