Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCATGATCTTCGCCTCCTGCCACTTGGTGCTCTCCCAGCTCCCCAACTTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTGgtgggttcccgttcgttcctctctatatatatatatctctgtcatgcccatgcgtacgccaacaccactgatatatatatatgcttgttgcag

Basic information

species Zea mays
transcript GRMZM2G127338_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127338_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 3
TCATCATGATCTTCGCCTCCTGCCACTTGGTGCTCTCCCAGCTCCCCAACTTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTGgtgggttcccgttcgttcctctctatatatatatatctctgtcatgcccatgcgtacgccaacaccactgatatatat-atatgct-tgttgcag
|||||||||||||||||||    || || ||||||||||| |||||||||||| |||||||||| || || || || || || || ||||||||   |||   ||| ||  ||      |||  | | ||  | |   |||      ||| | ||  |||||   || | | |||| | || |  | || |||||
TCATCATGATCTTCGCCTCTGTTCATTTCGTGCTCTCCCATCTCCCCAACTTCAACTCCATCTCTGGTGTTTCTCTTGCAGCTGCAGTCATGTC--CTTGA--Ggtaccaattga----tcttaagaaatg-aaactgctg----atccaagtgtgagccaaacacaataacatatttgatgttttgtgatgcag

upper sequence: GRMZM2G127338_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ25874 (Selaginella moellendorffii), 5'ss of exon 3
TCATCATGATCTTCGCCTCCTGCCACTTGGTGCTCTCCCAGCTCCCCAACTTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTGgtgggttcccgt-tcgttcctctctatatatatatatctctgtcatgcccatgcgtacgccaacaccactgatatatatatatgcttgttgcag
  ||| |  |||| |||||    |||||  |  | ||||||||||| |||||| |||||||| |||| |||||| | || || ||||||||||| ||  |||  |     |   |     | | ||   |  | |  |    |  |  |  |   | |||                                  
GGATCCTCGTCTTTGCCTCAGTTCACTTCTTCTTGTCCCAGCTCCCAAACTTCAACTCCATCACCGGAGTCTCCTTGGCAGCAGCCGTCATGTCTCTCAGgtaagaagaagcaccaaaaatttttacgcaactttgccaactttttatctcttt-tccgcag--------------------------------

upper sequence: GRMZM2G127338_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ10950 (Selaginella moellendorffii), 5'ss of exon 3
TCATCATGATCTTCGCCTCCTGCCACTTGGTGCTCTCCCAGCTCCCCAACTTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTGgtgggttcccgttcgttcctctctatatatatatatctctgtcatgcccatgcgtacgccaacaccactgatatatatatatgcttgttgcag
  ||| |  |||| |||||    |||||  |  | ||||||||||| |||||| |||||||| |||| |||||| | || || ||||||||||| ||  |||  |     |  |     ||   |  | ||   | || || ||  |   |   ||   |    || | |                       
GGATCCTCGTCTTTGCCTCGGTTCACTTCTTCTTGTCCCAGCTCCCAAACTTCAACTCCATCACCGGAGTCTCCTTGGCAGCAGCCGTCATGTCTCTCAGgtaagaagaagaac-----tcaaaacttttacgcaactttgcca-actttt---tatttcttttccgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211348400|gb|FL389761.1|FL389761
EST:     TTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTG                         CTACTCGACGATCGCGTGGATCG
genomic: TTCCACTCCATCTCCGGCGTCTCCCTCGCCGCCGCCGTCATGTCGCTTTGgtgggttccc ... cttgttgcagCTACTCGACGATCGCGTGGATCG