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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtagattgtattactggtgctctacgtaccactgtctcgtactgtacgtacatacatacgtacggatacgggataccctatactatattttttt...

Basic information

species Zea mays
transcript GRMZM2G127134_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127134_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g12740.1 (Oryza sativa), 5'ss of exon 3
GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtagattgtattactg-gtgctctacgtaccactgtctcgtactgtacgtacatacatacgtacggatacgggataccct-atactatattttttt
||| |||||||||||||| || ||| ||||||||||||| |||||   ||||||||| ||||||||||| ||||||||||||||||  ||||| || |||||||||      ||   |||       ||  |||||   |||   || |   | |||| |  |||||      |      |    | | |  | | | ||| 
GGCGGCCGCCATGGCCGTGGGGCTGGTCAGCCTCGTCGCCGGCGTCTTCTTCTACCGGAACAAGCCGCCGCAGGGCAGCATCTTCATGCCCATCGCCAAGgtacgtacgttatgccgtacaatacaatcgtcgtacg--tgtacggttcgtcatgtacttttatacgctttcttcttttttttttttagagaaaaatatttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757221|gb|DY541362.1|DY541362
EST:     AGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: AGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|78122971|gb|DV541355.1|DV541355
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|50335696|gb|CO530822.1|CO530822
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|88752665|gb|DY536806.1|DY536806
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|78088276|gb|DV516669.1|DV516669
EST:     CCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: CCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|94476398|gb|EB705356.1|EB705356
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|76292337|gb|DV031905.1|DV031905
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|93013964|gb|EB639484.1|EB639484
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|149079411|gb|EE168388.2|EE168388
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71306900|gb|DR789604.1|DR789604
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|50333317|gb|CO528443.1|CO528443
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|74236265|gb|DT644179.1|DT644179
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148955217|gb|EC900743.2|EC900743
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|76927243|gb|DV171193.1|DV171193
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71767933|gb|DR965870.1|DR965870
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|88746990|gb|DY531131.1|DY531131
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|149112066|gb|EE295007.2|EE295007
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71757756|gb|DR955693.1|DR955693
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71765079|gb|DR963016.1|DR963016
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|78110836|gb|DV529234.1|DV529234
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148963668|gb|EE014729.2|EE014729
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|74234780|gb|DT642694.1|DT642694
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|91056734|gb|EB167152.1|EB167152
EST:     TCTACCGCAGCAAGCCGCCACAGGGCAGCATGTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|94476941|gb|EB705899.1|EB705899
EST:     AACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: AACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148935734|gb|EC879777.2|EC879777
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|74237024|gb|DT644938.1|DT644938
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|78113840|gb|DV532229.1|DV532229
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|89764009|gb|DY690971.1|DY690971
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|76010433|gb|DT937603.1|DT937603
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148972659|gb|EE023620.2|EE023620
EST:     CTACCGCAACAAGCCGCCACA-GGCAGGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: CTACCGCAACAAGCCGCCACAGGGCA-GCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|33466948|gb|CF243997.1|CF243997
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|101383499|gb|EB813805.1|EB813805
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|149085128|gb|EE174633.2|EE174633
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71306925|gb|DR789617.1|DR789617
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148955218|gb|EC900744.2|EC900744
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|50322536|gb|CO517662.1|CO517662
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|86475121|gb|DY241491.1|DY241491
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|149061235|gb|EE157500.2|EE157500
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|148928193|gb|EE284700.2|EE284700
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|78079776|gb|DV508188.1|DV508188
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|84970016|gb|DW468399.1|DW468399
EST:     ACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGGGAGCAAGAGGAAGCAAGTGTGCCCGTGGACGGCC
genomic: ACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|71422728|gb|DR805806.1|DR805806
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
EST: gi|76290055|gb|DV029623.1|DV029623
EST:     TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAG                         GTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC
genomic: TCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 47 (downstream exon)
Score: 18

GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACA


Block sizes: 46 (upstream exon), 40 (downstream exon)
Score: 14

GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 90

GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACA


Block sizes: 39 (upstream exon), 34 (downstream exon)
Score: 3

GGCCGCCGCCATGGCCGTCGGCCTGCTCAGCCTCGTCGCTGGCGTTGCCTTCTACCGCAACAAGCCGCCACAGGGCAGCATCTTCACTCCCATAGCTAAGgtacgtgtag ... gtgtgtgtagGTATTTGTCGCCGCAGTGAGCAAGAGGAAGCAAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACA