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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTTGCATACTACATCGCTGAAGCACTGGAATATTGTAGCACCGAAGGAAGGCCTTTGTATCATGACCTAAATGCATATAGGGTCCTCTTTGATGAGgtaactgttcctttggttttcacttttccttacagccctcgagttatacggagaactgccaatactatagtatcataaagctgaggaaacgtggataata...

Basic information

species Zea mays
transcript GRMZM2G127050_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 3
GAGAGTTGCATACTACATCGCTGAAGCACTGGAATATTGTAGCACCGAAGGAAGGCCTTTGTATCATGACCTAAATGCATATAGGGTCCTCTTTGATGAGgt----aactgttcctttggttttcacttttccttacagccc-tcgagttat---acggagaactgccaat-actatagtatcataaagctgaggaaacgtggataata
 ||||||||| || |||| ||||||||||| || || || || | | | | | ||||||| ||||||||| ||||||||||||||||||| |||||||||||    |||   | |||| ||  |   | |   ||  |  |  | |  || |   | |  | |  |  | | |  ||||||| ||  | ||    |||           
AAGAGTTGCACACCACATTGCTGAAGCACTTGACTACTGCAGTAGCAATGAACGGCCTTTATATCATGACTTAAATGCATATAGGGTCCTTTTTGATGAGgtaagcaaccaattcttttgtggtgtttgtatgttttattctgtaggattgtctcatgtggtagaggaagtgaggatagtat-atttatctctacaaatac--------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 3
GAGAGTTGCATACTACATCGCTGAAGCACTGGAATATTGTAGCACCGAAGGAAGGCCTTTGTATCATGACCTAAATGCATATAGGGTCCTCTTTGATGAGgta----actgttcctttggttttcacttt---tccttacagccctcgagttatacggagaactgccaatactatagtatcataaagctgaggaaacgtggataata
 ||||||||    || || ||||||||| | || ||||||||  |||||||  |||| ||||| |||||| | ||||| || ||||| |||||||||||||||    |      || |  | |  | |||   |  |||    | || | |       || |||| |   | | |  |  | || |  |     |  |||       
AAGAGTTGCTCTATATATTGCTGAAGCATTAGATTATTGTAGTGCCGAAGGGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGgtattgtaacagaactcttatctcaagtttaagtatttatcatcttctattgtctacaagcactgacgtgagtttt-tcgcttacactttcattagggtga------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149009662|gb|EE041601.2|EE041601
EST:     GAAGGCCTTTGTATCATGACCTAAATGCATATAGGGTCCTCTTTGATGAG                         AATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGAT
genomic: GAAGGCCTTTGTATCATGACCTAAATGCATATAGGGTCCTCTTTGATGAGgtaactgttc ... tcttctgcagAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGAT