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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatctaactcactgtcattttcag

Basic information

species Zea mays
transcript GRMZM2G126900_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgctta----ctgccgatgcaactgt-cgtc-gccacgcttctctaatctaactcactgtcat-tttcag--------
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||||     |  |||  ||  |  |   |  |    | | |  || || ||  | ||  || ||   |   |||  |||| |  | ||    |||         
CTCGACATGCCGCAGATCGAGCACCTCCTCCAGACCGCCGAGGCCATCCGCAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaa--ttaaactattttataaccgccacaaaaaccgtcactgtaattgcacatccaccgcgtcgccgcaatg-aactgataggcaggcctcacacgataca

upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatcta-actcactgtcattttcag----
 |||||   || ||||||||||| ||||| ||||| || || |||||| | || || ||||| || || ||||||||||| || ||||| || ||||||||||     |  ||| | || ||    | ||  |  || |  || | ||||   |  | ||    | | |    |   |||   | | |     
TTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaa--ttatactccctgatt--cggtttgatcacgtta-aaatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag

upper sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 4
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaact--gtcgtcgccacgcttctctaatctaactcactgtcattttcag------------
 ||||   ||| |||||||||||| |||||||||| || ||||||||||| || ||||| ||  ||||||| ||| | |||||||| |  || ||||| ||||    ||   ||  |    | |||   | ||    ||   | |  || |  ||||     |     |      ||||  ||   |||             
TTGGATGAGCCTCAGATCGAGCACTTGCTGCAGACAGCTGAGGCCATCCGAAAAGACTATCCTAACGAGGATTGGATGCACCTCACTGCTCTTATCCATGgtaaattctctgct--tcatctccttaaatcctatgaatagtattaggtagaggccagaggacctgtgtaaggaacactcccaacctcattgatattgtacg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31363556|gb|CD447913.1|CD447913
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|211533467|gb|FL294715.1|FL294715
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|211533468|gb|FL294716.1|FL294716
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|67014192|gb|CO442941.1|CO442941
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78084506|gb|DV512899.1|DV512899
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|88752150|gb|DY536291.1|DY536291
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|76289997|gb|DV029565.1|DV029565
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78119916|gb|DV538300.1|DV538300
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|149042044|gb|EE047019.2|EE047019
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|148960892|gb|EE011574.2|EE011574
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|15554177|gb|BI644175.1|BI644175
EST:     CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|211533473|gb|FL294721.1|FL294721
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|211530472|gb|FL294712.1|FL294712
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|93284184|gb|EB676448.1|EB676448
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78112469|gb|DV530863.1|DV530863
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|60342265|gb|DN209238.1|DN209238
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|93016474|gb|EB641994.1|EB641994
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78076468|gb|DV504902.1|DV504902
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|148941676|gb|EC886623.2|EC886623
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|40303359|gb|CK347746.1|CK347746
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|101386278|gb|EB815159.1|EB815159
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|67041064|gb|CO467319.1|CO467319
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|149010866|gb|EE042255.2|EE042255
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|78088525|gb|DV516918.1|DV516918
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|149100878|gb|EE186973.2|EE186973
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|71325953|gb|DR799659.1|DR799659
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|60396286|gb|DN229155.1|DN229155
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|93281928|gb|EB674192.1|EB674192
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGNGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|211530469|gb|FL294709.1|FL294709
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGC
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGC
EST: gi|78114314|gb|DV532703.1|DV532703
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
EST: gi|148942392|gb|EC887411.2|EC887411
EST:     CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACG                         ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG
genomic: CAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctg ... tcattttcagACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGG