1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTATTATAGACGAGGCGCAGCTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaactgctctacctgtgtacactgtacatatctccttgtgacctagactacttattaccaatatatattggctagtcaattctattacttttggatatctattaaattagaaaacaatcttttcccag
species | Zea mays |
transcript | GRMZM2G126435_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAGEST: gi|71769984|gb|DR967921.1|DR967921
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAGEST: gi|71436892|gb|DR817942.1|DR817942
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAGEST: gi|60359346|gb|DN226319.1|DN226319
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAGEST: gi|33093738|gb|CF053732.1|CF053732
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAGEST: gi|93012246|gb|EB637766.1|EB637766
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
EST: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAG GTTNNNNNNNTCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
genomic: CTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaac ... cttttcccagGTTAAAAAAATCTGCCCAAATGATCCAGATGCTACAAGAAAGTTGAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTATTATAGACGAGGCGCAGCTTATCTTGCCATGGGAAAGTTCAAGGAAGCCCTGAAGGATTTTCAGCAGgttagcaaactgctctacctgtgtacactgtacatatctccttgtgacctagactacttattaccaatatatattggctagtcaattctattacttttggatatctattaaattagaaaacaatcttttcccag
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG