1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCGAGAGTTCAGTCATCGTGTAAAATCAGTATCGATGGCTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaatattttattaataatttaggaaagtctgtgtgatctttacagttacctaatattctctttcttccag
species | Zea mays |
transcript | GRMZM2G126079_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAG CGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATTEST: gi|50323334|gb|CO518460.1|CO518460
genomic: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaa ... tttcttccagCGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATT
EST: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAG CGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATTEST: gi|148951394|gb|EC897111.2|EC897111
genomic: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaa ... tttcttccagCGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATT
EST: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAG CGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATTEST: gi|74243474|gb|DT651388.1|DT651388
genomic: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaa ... tttcttccagCGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATT
EST: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAG CGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATT
genomic: CTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaa ... tttcttccagCGTGCTAAGGAAATCTATTTCAAGCATTGGGACTTGCAAGGCCCTGTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGAGTTCAGTCATCGTGTAAAATCAGTATCGATGGCTAAATTCACTTCCCAAGAAGTTTCGGCACTTCAGGAAGGGGGCAATGAGgttcgcctaatattttattaataatttaggaaagtctgtgtgatctttacagttacctaatattctctttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT