1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCAATGGATGGTAATTTATTTAATGACATTCTGGGCTCCATACAGCAGCCAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatcatttgaaacaagagacgaagatgctgtgtttgtttcataccatagatatgtactggtgatcacccaaatatttctacttttacag
species | Zea mays |
transcript | GRMZM2G125777_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTTACC-A-GAG GTCAACAATACCATEST: gi|211005049|gb|FL466904.1|FL466904
genomic: AGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTT-ACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCAT
EST: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|211005050|gb|FL466905.1|FL466905
genomic: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|149043144|gb|EE047289.2|EE047289
genomic: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGATGGTAGCAGTTCCCATGCTTTTAATGCCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|93282364|gb|EB674628.1|EB674628
genomic: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: AGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|91874225|gb|EB404182.1|EB404182
genomic: AGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCTEST: gi|211425716|gb|FL474991.1|FL474991
genomic: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
EST: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAG GTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
genomic: CAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatc ... acttttacagGTCAACAATACCATGTTTACATATAGTCCAACTCAAAAGGTTTTAGAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATGGATGGTAATTTATTTAATGACATTCTGGGCTCCATACAGCAGCCAGATGGTAGCAGTTCCCATGCTTTTAATGGCCCAGTCCTTACCCAAGAGgtatgatatcatttgaaacaagagacgaagatgctgtgtttgtttcataccatagatatgtactggtgatcacccaaatatttctacttttacag
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