1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTTCGAGCTAGCTCCGTGAGGCGGTATGGCAGGAAGCGGCACACTGCTCCGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccacatggtttgtcttgctgatattgaagagcttggtagctagctacactggccttgagtaggaatgcatggaaaatagctaaatcttgatttg...
species | Zea mays |
transcript | GRMZM2G125516_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAA CACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACCEST: gi|24773757|gb|CA409011.1|CA409011
genomic: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccac ... cggaatgcagCACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACC
EST: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGCGAGGGTGGCCACCAA CACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCCACCEST: gi|149083882|gb|EE173258.2|EE173258
genomic: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccac ... cggaatgcagCACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACC
EST: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAA CACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACCEST: gi|30306496|gb|CD001169.1|CD001169
genomic: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccac ... cggaatgcagCACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACC
EST: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAA CACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACC
genomic: CGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccac ... cggaatgcagCACGCCATTGCGTACGTCCAGGGCGACAAGTACTATGGTGCAAAGGCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCGAGCTAGCTCCGTGAGGCGGTATGGCAGGAAGCGGCACACTGCTCCGAACCCACTGTCTGTTGATCCCAACATGCTCAGTGAGGGTGGCCACCAAgtacgtccacatggtttgtcttgctgatattgaagagcttggtagctagctacactggccttgagtaggaatgcatggaaaatagctaaatcttgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatag