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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGGGCCTCACCACGCTCGACCTCCTCCACAAGCTCCATGCCGTAGATGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCCCGAATCTGgtacctcccccttgcccaatcctcagatctgcctttccctgggtgattggattgcgaagtaataatatggtattgattcacatgtgtgatctccctgggttgtatgtggatgcgcag

Basic information

species Zea mays
transcript GRMZM2G124557_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124557_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g40140.1 (Oryza sativa), 5'ss of exon 2
TACTGGGGCCTCACCACGCTCGACCTCCTCCACAAGCTCCATGCCGTAGATGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCCCGAATCTGgtacctcccccttgcccaatcctcagatctgcct--ttccctgggtgattg---gattgcga--agtaataatatggtattgattc--------acatgtgtgatctc--cctgggttgtatgtg-gatgcgcag-------------------
||||||||||||||||||||||||||||||||||||||||  ||||| || |||| ||||||| |||| ||||||||||||||||||||||| ||||| |||||| |      |   |       ||  ||  |  ||   ||  ||||||   |||||      ||  |  |    | | ||| |        | ||||||| |||   | ||   |||  ||  | | |                       
TACTGGGGCCTCACCACGCTCGACCTCCTCCACAAGCTCCGCGCCGTGGAAGCCGACGAGGTCATCGAGTGGATCATGTCCTGCTACCACCCGGAATCCGgtaccacgagaagg---agggggtggaattgattgattgattgattgattgattgattgttgttggtggtggtggtctttggatccttgagaggagatgtgtgttcttgacttgatctgtgcgtttggttcatcttcggatttgggtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19436989|gb|BM953399.1|BM953399
EST:     TGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCCCGAATCTG                         GTGGATTTGGAGGGAACGTTAGGCATGACCCGCATGTCCTCTACACGCTTA
genomic: TGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCCCGAATCTGgtacctcccc ... ggatgcgcagGTGGATTTGGAGGGAACGTTGGGCATGACCCGCATGTCCTCTACACGCTTA
EST: gi|76910998|gb|DV164124.1|DV164124
EST:     TGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCC-GAATCTG                         GTGGATTTGGAGGGAACGTTGG
genomic: TGCCGCCGAGGTCGTCGACTGGATCATGTCCTGCTACCACCCCGAATCTGgtacctcccc ... ggatgcgcagGTGGATTTGGAGGGAACGTTGG