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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCAATGACGAACTTCGTGTGGTTTTTGAAACTGACAACACCGACATGTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagacttctatttcttttgatcaacatatgctactttatgtttgcattactaaagttcagtcctggaatttgctcaagtgcttcctaatgacattgcag

Basic information

species Zea mays
transcript GRMZM2G124502_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124502_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g56980.1 (Oryza sativa), 5'ss of exon 3
ATTTGCAATGACGAACTTCGTGTGGTTTTTGAAACTGACAACACCGACATGTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagacttctatttcttttgatcaacatatgctactttatgtttgcattactaaagttcagtcctg--gaatttgctcaagtgcttcctaatgacattgcag
|| |||||||| ||||||||||||||||||| ||||||||  || ||||||||||| ||||||||||| ||||| || || ||||| |||||||||||||||||   |||||  |||||||| || | || |               |  | |||| |||  || |||  | |  | |  || |   |  |  ||    |||||
ATCTGCAATGATGAACTTCGTGTGGTTTTTGGAACTGACACAACTGACATGTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttcttctgcttcttttggtctagatgt---------------cgctgctaatgttttgttctgatggaagttcctaattatgttttcttggttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445750|gb|DR826800.1|DR826800
EST:     AAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAA                         AAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
genomic: AAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagactt ... gacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
EST: gi|71440370|gb|DR821420.1|DR821420
EST:     GTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAA                         AAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC
genomic: GTTTAAAATGAATAAATTATTGGCTAAGCACATAACCCCACTTGACCCAAgtacagactt ... gacattgcagAAGGTCAACTTCATGAAGTAAAAAGAATGAAGGCTCCCACCATGTCTCCTC